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BaseInfo

ncRNA ID	novel_zma_miR4870
Species	Zea mays
Class	miRNA
Genome position	Chr3:71609215-71609413 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	176 - GUUUGCACGGUUGCACGGAGAGGU - 199
Stem-loop(if miRNA)	-  -                      C         C                     -    -------------     -----C UGGAUAAUUUUACACUUAACU  CC CUCCGUGCAACCGUGCAAACUU UAAUCUGAA CACAUGAUGUUGAUCUAAGGG ACGU             AGGGG      G                     G  || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||             |||||      |  GG GAGGCACGUUGGCACGUUUGAA AUUAGACUU GUGUACUAUAACUAGGUUCCC UGCA             UCCCC      C                     U U  A                      U         A                     C    CGCCUCCUCACAC     UCUAAA UUUUGCACACUAAUCGUCGCC
Stem-loop sequence	CCCUCCGUGCAACCGUGCAAACUUCUAAUCUGAACCACAUGAUGUUGAUCUAAGGGACGUAGGGGCGUGGAUAAUUUUACACUUAACUGUCCGCUGCUAAUCACACGUUUUCAAAUCUCCCCUCACACUCCUCCGCACGUCCCCUUGGAUCAAUAUCAUGUGAUUCAGAUUAUAAGUUUGCACGGUUGCACGGAGAGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU960978.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   |||*||||*|||||=||||||||| targets:814   ACCCCUCCAUGCAAUCGUGCAAAC   837 Target Full Sequence	2.5	Zea mays clone 230113 mRNA sequence	NA	coding protein	psRNATarget
XM_008676928.2	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   ||=*||||||||||||*||||||| targets:2797   ACUCCUCCGUGCAACCAUGCAAAC   2820 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g09650, chloroplastic (LOC103651307), mRNA	NA	coding protein	psRNATarget
HI403099.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   |=|*=||=||||||*||||||||| targets:19   AUCAUUCUGUGCAAGCGUGCAAAC   42 Target Full Sequence	2.5	Sequence 1224 from Patent EP2074227	NA	coding protein	psRNATarget
JB163560.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   |=|*=||=||||||*||||||||| targets:19   AUCAUUCUGUGCAAGCGUGCAAAC   42 Target Full Sequence	2.5	Sequence 1224 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235229.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   |=|*=||=||||||*||||||||| targets:19   AUCAUUCUGUGCAAGCGUGCAAAC   42 Target Full Sequence	2.5	Sequence 1224 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235511.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1506 from Patent EP2985353	NA	coding protein	psRNATarget
JB163842.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1506 from Patent EP2559767	NA	coding protein	psRNATarget
HI403381.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1506 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235447.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
HI403317.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
JB163778.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   *|||-||=||||||*||||||||| targets:12   UCCU-UCUGUGCAAGCGUGCAAAC   34 Target Full Sequence	2.5	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
EZ074965.1	ncRNA:24   UGGAGAGGCACGUUGGCACGUUUG   1   ***|*||||*|||||||||||=|| targets:144   UGAUAUCCGCGCAACCGUGCAGAC   167 Target Full Sequence	2.5	TSA: Zea mays contig10602, mRNA sequence	NA	coding protein	psRNATarget