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BaseInfo

ncRNA ID	novel_zma_miR4869
Species	Zea mays
Class	miRNA
Genome position	Chr3:56887011-56887197 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR3341905;SRR4237225;SRR4237226;SRR5099742;SRR5105959;SRR5105961;SRR5105963
Length	23
Mature sequence(if miRNA)	1 - GAGGAAUGGACUCAUGAUGCACC - 23
Stem-loop(if miRNA)	--        G     U      C  C  A  G               AC              U    UAUA     AAAA        AG  CU   GAGGAAUG ACUCA GAUGCA CA CU AU UUAGAUGGAGUGAUU  UUAAACCAAACACC CCUG    UGUCU    AGUUUUAU  AG  U   |||||||| ||||| |||||| || || || |||||||||||||||  |||||||||||||| ||||    |||||    ||||||||  ||   CUCUUUAC UGAGU CUACGU GU GA UA AAUCUACUUCACUAA  AGUUUGGUUUGUGG GGAU    AUAGA    UCAAAAUA  UC  A AA        A     C      A  A  G  G               GU              -    -UCA     ---A        AG  AA
Stem-loop sequence	GAGGAAUGGACUCAUGAUGCACCACCUAAUGUUAGAUGGAGUGAUUACUUAAACCAAACACCUCCUGUAUAUGUCUAAAAAGUUUUAUAGAGCUUAAACUGAAUAAAACUAAGAUAACUUAGGGGUGUUUGGUUUGAUGAAUCACUUCAUCUAAGAUGAGAUGAUGCAUCCUGAGUACAUUUCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ075113.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   |||||||||||=||||||||||| targets:64   GGUGCAUCAUGGGUCCAUUCCUC   86 Target Full Sequence	1.5	TSA: Zea mays contig10750, mRNA sequence	NA	coding protein	psRNATarget
EZ095024.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   |||||||||||||||||||*||| targets:75   GGUGCAUCAUGAGUCCAUUACUC   97 Target Full Sequence	1.5	TSA: Zea mays contig30676, mRNA sequence	NA	coding protein	psRNATarget
EU946477.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   ||||||||||||||*|||||||| targets:259   GGUGCAUCAUGAGUACAUUCCUC   281 Target Full Sequence	1.5	Zea mays clone 313395 mRNA sequence	NA	coding protein	psRNATarget
BT040813.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   |||||||||||||||||||*||| targets:1228   GGUGCAUCAUGAGUCCAUUACUC   1250 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0132I23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158057.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   |||*|||||||||||||||=||| targets:1511   GGUACAUCAUGAGUCCAUUUCUC   1533 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285163 (umc1419), mRNA	NA	coding protein	psRNATarget
EU971066.1	ncRNA:23   CCACGUAGUACUCAGGUAAGGAG   1   |||*|||||||||||||||=||| targets:1511   GGUACAUCAUGAGUCCAUUUCUC   1533 Target Full Sequence	1.5	Zea mays clone 356857 glucan endo-1,3-beta-glucosidase precursor, mRNA, complete cds	NA	coding protein	psRNATarget