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BaseInfo

ncRNA ID	novel_zma_miR4867
Species	Zea mays
Class	miRNA
Genome position	Chr8:168717141-168717233 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AAGAAACGGAGGGAGUACGUACUA - 24
Stem-loop(if miRNA)	--A   -                                       A    UAC UACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGC A    ||| |||||||||||||||||||||||||||||||||||||||    AUG AUGAGGGAGGCAAAGAAAAAUAAUCAGCGACCUAUCACG U AUC   C                                       U
Stem-loop sequence	AUACUACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAUUGCACUAUCCAGCGACUAAUAAAAAGAAACGGAGGGAGUACGUACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT070166.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |||||||||||||||||||||=|| targets:757   UAGUACGUACUCCCUCCGUUUUUU   780 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001328133.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |||||||||||||||||||||=|| targets:757   UAGUACGUACUCCCUCCGUUUUUU   780 Target Full Sequence	1.5	Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA	NA	coding protein	psRNATarget
BT024153.1	ncRNA:24   AUCA-UGCAUGAGGGAGGCAAAGAA   1   |*||-|||||||||||||||||||| targets:182   UUGUCACGUACUCCCUCCGUUUCUU   206 Target Full Sequence	0.0	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
EU964901.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |=*||*|||||||||||||||||| targets:490   UGUUAAGUACUCCCUCCGUUUCUU   513 Target Full Sequence	1.0	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
EU974849.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |=*||*|||||||||||||||||| targets:562   UGUUAAGUACUCCCUCCGUUUCUU   585 Target Full Sequence	1.0	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |=*||*|||||||||||||||||| targets:562   UGUUAAGUACUCCCUCCGUUUCUU   585 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
XM_020544250.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |=|*||*||||||||||||||||| targets:2428   UGGGACAUACUCCCUCCGUUUCUU   2451 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ242326.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8321 from Patent EP2985353	NA	coding protein	psRNATarget
JB169171.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 6835 from Patent EP2559767	NA	coding protein	psRNATarget
HI410196.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8321 from Patent EP2074227	NA	coding protein	psRNATarget
HI408710.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 6835 from Patent EP2074227	NA	coding protein	psRNATarget
JB170657.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8321 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240840.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=|||||||||||||||||| targets:1   AUGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 6835 from Patent EP2985353	NA	coding protein	psRNATarget
HI403356.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |**|*||||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUU   27 Target Full Sequence	0.0	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |**|*||||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUU   27 Target Full Sequence	0.0	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
JB163817.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |**|*||||||||||||||||||| targets:4   UUCUUCGUACUCCCUCCGUUUCUU   27 Target Full Sequence	0.0	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |=|-|*|||||||||||||||||| targets:42   UGG-AGGUACUCCCUCCGUUUCUU   64 Target Full Sequence	1.0	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
XM_020546173.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   ||-||=*||||||||||||||||| targets:1457   UA-UAUAUACUCCCUCCGUUUCUU   1479 Target Full Sequence	2.0	PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA	NA	coding protein	psRNATarget
BT067066.1	ncRNA:24   AUCAUGCA-UGAGGGAGGCAAAGAA   1   |||*|*||-|||||||||||||||| targets:411   UAGCAAGUUACUCCCUCCGUUUCUU   435 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0180L06 mRNA, complete cds	NA	coding protein	psRNATarget
EU970288.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   **|*|=|||||||||=|||||||| targets:1324   AUGCAUGUACUCCCUUCGUUUCUU   1347 Target Full Sequence	2.5	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
JB170476.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=||||||||||=||||||| targets:1   AUGUACUCCCUCUGUUUCUU   20 Target Full Sequence	2.5	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=||||||||||=||||||| targets:1   AUGUACUCCCUCUGUUUCUU   20 Target Full Sequence	2.5	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
HI410015.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |=||||||||||=||||||| targets:1   AUGUACUCCCUCUGUUUCUU   20 Target Full Sequence	2.5	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
BT017382.1	ncRNA:24   AUCA---UGCAUGAGGGAGGCAAAGAA   1   ||||---|=*||||||||||||||||* targets:685   UAGUUUCAUAUACUCCCUCCGUUUCUC   711 Target Full Sequence	3.0	Zea mays clone EL01N0326E08.c mRNA sequence	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:22   CAUGCAUGAGGGAGGCAAAGAA   1   *|*=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUU   22 Target Full Sequence	1.0	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
JB167731.1	ncRNA:22   CAUGCAUGAGGGAGGCAAAGAA   1   *|*=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUU   22 Target Full Sequence	1.0	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
HI407270.1	ncRNA:22   CAUGCAUGAGGGAGGCAAAGAA   1   *|*=|||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCUU   22 Target Full Sequence	1.0	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2198   AAUUAUAUACUCCCUCCGUUUCUU   2221 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2198   AAUUAUAUACUCCCUCCGUUUCUU   2221 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2198   AAUUAUAUACUCCCUCCGUUUCUU   2221 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2219   AAUUAUAUACUCCCUCCGUUUCUU   2242 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2219   AAUUAUAUACUCCCUCCGUUUCUU   2242 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2219   AAUUAUAUACUCCCUCCGUUUCUU   2242 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2198   AAUUAUAUACUCCCUCCGUUUCUU   2221 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2157   AAUUAUAUACUCCCUCCGUUUCUU   2180 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2212   AAUUAUAUACUCCCUCCGUUUCUU   2235 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2237   AAUUAUAUACUCCCUCCGUUUCUU   2260 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2198   AAUUAUAUACUCCCUCCGUUUCUU   2221 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|*||=*||||||||||||||||| targets:2136   AAUUAUAUACUCCCUCCGUUUCUU   2159 Target Full Sequence	2.0	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
EU955357.1	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |*|*|*|||||||||||||||||| targets:1241   UCGGAAGUACUCCCUCCGUUUCUU   1264 Target Full Sequence	1.0	Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
NM_001112301.2	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   |*|*|*|||||||||||||||||| targets:1303   UCGGAAGUACUCCCUCCGUUUCUU   1326 Target Full Sequence	1.0	Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
HI409961.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
HI408945.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
JB169406.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
JB170422.1	ncRNA:20   UGCAUGAGGGAGGCAAAGAA   1   |*|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCUU   20 Target Full Sequence	1.0	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *|||-=*||||||||||||||||| targets:1594   CAGU-UAUACUCCCUCCGUUUCUU   1616 Target Full Sequence	2.0	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:24   AUCAUGCAUGAGGGAGGCAAAGAA   1   *=**|*|||||||||||||||||| targets:157   AGAAAAGUACUCCCUCCGUUUCUU   180 Target Full Sequence	1.0	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   AUCAUGC-AUGAGGGAGGCAAAGAA   1   *|**|=|-||||||||||||||||| targets:3   AAAAAUGAUACUCCCUCCGUUUCUU   27 Target Full Sequence	3.0	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   AUC-AUGCAUGAGGGAGGCAAAGAA   1   *||-|*|*||||||||||||||||| targets:3   CAGAUUCAUACUCCCUCCGUUUCUU   27 Target Full Sequence	1.0	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   AUC-AUGCAUGAGGGAGGCAAAGAA   1   *||-|*|*||||||||||||||||| targets:3   CAGAUUCAUACUCCCUCCGUUUCUU   27 Target Full Sequence	1.0	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   AUCAUGC-AUGAGGGAGGCAAAGAA   1   *|**|=|-||||||||||||||||| targets:3   AAAAAUGAUACUCCCUCCGUUUCUU   27 Target Full Sequence	3.0	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   AUCAUGC-AUGAGGGAGGCAAAGAA   1   *|**|=|-||||||||||||||||| targets:3   AAAAAUGAUACUCCCUCCGUUUCUU   27 Target Full Sequence	3.0	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   AUC-AUGCAUGAGGGAGGCAAAGAA   1   *||-|*|*||||||||||||||||| targets:3   CAGAUUCAUACUCCCUCCGUUUCUU   27 Target Full Sequence	1.0	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget