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BaseInfo

ncRNA ID	novel_zma_miR4864
Species	Zea mays
Class	miRNA
Genome position	Chr8:168210949-168211004 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	33 - AUAUCUGGUGCACAUAGAAGAUUG - 56
Stem-loop(if miRNA)	--  G   C                  C   AU UUC AUGUGCACCAGAUAUGUC G   || ||| ||||||||||||||||||   UA AAG UACACGUGGUCUAUACAG G GU  G   A                  G
Stem-loop sequence	AUGUUCCAUGUGCACCAGAUAUGUCCGGGGACAUAUCUGGUGCACAUAGAAGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235128.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   |||||||||||||||||=|||||| targets:235   CAAUCUUCUAUGUGCACUAGAUAU   258 Target Full Sequence	1.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   |||||||||||||||||=|||||| targets:235   CAAUCUUCUAUGUGCACUAGAUAU   258 Target Full Sequence	1.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   |||||||||||||||||=|||||| targets:235   CAAUCUUCUAUGUGCACUAGAUAU   258 Target Full Sequence	1.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   ||=|||||||||||=||||||||| targets:3307   CAGUCUUCUAUGUGUACCAGAUAU   3330 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   ||=|||||||||||=||||||||| targets:3129   CAGUCUUCUAUGUGUACCAGAUAU   3152 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT041325.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   |||||*||*||||||||||||||| targets:1278   CAAUCCUCCAUGUGCACCAGAUAU   1301 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0204C02 mRNA, complete cds	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   |||||*||*||||||||||||||| targets:509   CAAUCCUCCAUGUGCACCAGAUAU   532 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235335.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   ||||*||||||||*|||||||||| targets:56   CAAUAUUCUAUGUACACCAGAUAU   79 Target Full Sequence	1.5	Sequence 1330 from Patent EP2985353	NA	coding protein	psRNATarget
HI403205.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   ||||*||||||||*|||||||||| targets:56   CAAUAUUCUAUGUACACCAGAUAU   79 Target Full Sequence	1.5	Sequence 1330 from Patent EP2074227	NA	coding protein	psRNATarget
JB163666.1	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   ||||*||||||||*|||||||||| targets:56   CAAUAUUCUAUGUACACCAGAUAU   79 Target Full Sequence	1.5	Sequence 1330 from Patent EP2559767	NA	coding protein	psRNATarget
BT061436.2	ncRNA:24   GUUAGAAGAUACACGUGGUCUAUA   1   =||*=||*|||*|||||||||||| targets:343   UAAAUUUAUAUAUGCACCAGAUAU   366 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds	NA	coding protein	psRNATarget