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BaseInfo

ncRNA ID	novel_zma_miR4861
Species	Zea mays
Class	miRNA
Genome position	Chr3:52698149-52698218 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	21
Mature sequence(if miRNA)	50 - CUCCAAUCCUCCUGGGAUCCC - 70
Stem-loop(if miRNA)	--    AA             U   AAUAAACUAA   GAUC  GGGAGGAUUGGAG GGA          U   ||||  ||||||||||||| |||   CUAG  UCCUCCUAACCUC CCU          U CC    GG             C   AACUCCCCCU
Stem-loop sequence	GAUCAAGGGAGGAUUGGAGUGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCUGGGAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106816.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   |||||=||=|||||||||||| targets:250   GGGAUUCCGGGAGGAUUGGAG   270 Target Full Sequence	2.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
JB170124.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:20   GGGAUCCCAGGAGGAUCGGAG   40 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:20   GGGAUCCCAGGAGGAUCGGAG   40 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:20   GGGAUCCCAGGAGGAUCGGAG   40 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:774   GGGAUCCCAGGAGGAUCGGAG   794 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:813   GGGAUCCCAGGAGGAUCGGAG   833 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:818   GGGAUCCCAGGAGGAUCGGAG   838 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:818   GGGAUCCCAGGAGGAUCGGAG   838 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU973567.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   ||||||||||||||||*|||| targets:38   GGGAUCCCAGGAGGAUCGGAG   58 Target Full Sequence	1.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
BT039623.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   *|||||*|||||||||*|||| targets:1576   UGGAUCACAGGAGGAUGGGAG   1596 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   *|||||*|||||||||*|||| targets:1576   UGGAUCACAGGAGGAUGGGAG   1596 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:21   CCCUAGGGUCCUCCUAACCUC   1   *|||||*|||||||||*|||| targets:1684   UGGAUCACAGGAGGAUGGGAG   1704 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget