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BaseInfo

ncRNA ID novel_zma_miR4860
Species Zea mays
Class miRNA
Genome position Chr7:28901070-28901157 [-]
Reference genome RefGen_v4
Source SRR2287163;SRR2287164;SRR2287165;SRR2089708
Length 24
Mature sequence(if miRNA) 65 - UCAUGUGGAUUGAGUGAGAUUGGA - 88
Stem-loop(if miRNA) --  A                     UU       A   CAAAC
  UC UGUGGAUUGAGUGAGAUUGGA  AGUUUAA UUU     A
  || |||||||||||||||||||||  ||||||| |||     A
  AG AUACCUAAUUUACUCUAACUU  UUAAAUU AAA     A
AU  -                     UU       A   AAACU
Stem-loop sequence UCAUGUGGAUUGAGUGAGAUUGGAUUAGUUUAAAUUUCAAACAAAUCAAAAAAAUUAAAUUUUUUCAAUCUCAUUUAAUCCAUAGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549703.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306

1.0 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178

1.0 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177

1.0 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105

1.0 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:248   UCCAAUCUCACUCAAUCCACAUGG   271

1.0 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:457   UCCAAUCUCACUCAAUCCACAUGG   480

1.0 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
HI403043.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||||||||||=|||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

1.0 Sequence 1168 from Patent EP2074227 NA coding protein psRNATarget
LQ235173.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||||||||||=|||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

1.0 Sequence 1168 from Patent EP2985353 NA coding protein psRNATarget
JB163504.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||||||||||=|||||||||||||
targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123

1.0 Sequence 1168 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:93   UCCAAUCUCACUCAAUCCACAUGG   116

1.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:89   UCCAAUCUCACUCAAUCCACAUGG   112

1.0 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:81   UCCAAUCUCACUCAAUCCACAUGG   104

1.0 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||||||||||||||=
targets:18   UCCAAUCUCACUCAAUCCACAUGG   41

1.0 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||=||||||||||||||||||||=
targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||=||||||||||||||||||||=
targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||=||||||||||||||||||||=
targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419

1.0 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
AY112141.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  ||=||||||||||||||=|||||=
targets:230   UCUAAUCUCACUCAAUCUACAUGG   253

2.5 Zea mays CL24213_1 mRNA sequence NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*||||||||||||||||
targets:122   UCCAAUCCCACUCAAUCCACAUGA   145

1.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  *=|||||||||||||||||||||=
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

1.0 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  *=|||||||||||||||||||||=
targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468

1.0 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:5806   UCCAAUCCCACUCAAUCCACAUGG   5829

2.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1231   UCCAAUCCCACUCAAUCCACAUGG   1254

2.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1201   UCCAAUCCCACUCAAUCCACAUGG   1224

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1083   UCCAAUCCCACUCAAUCCACAUGG   1106

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

2.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1960   UCCAAUCCCACUCAAUCCACAUGG   1983

2.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:2502   UCCAAUCCCACUCAAUCCACAUGG   2525

2.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:2213   UCCAAUCCCACUCAAUCCACAUGG   2236

2.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

2.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1817   UCCAAUCCCACUCAAUCCACAUGG   1840

2.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

2.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:1532   UCCAAUCCCACUCAAUCCACAUGG   1555

2.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

2.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241

2.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:530   UCCAAUCCCACUCAAUCCACAUGG   553

2.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:1056   UCCAAUCUCACCCAAUCCACAUGG   1079

2.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT087300.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||||||*|||||||||||=
targets:1023   UCCAAUCUCACCCAAUCCACAUGG   1046

2.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:178   UCCAAUCCCACUCAAUCCACAUGG   201

2.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:876   UCCAAUCCCACUCAAUCCACAUGG   899

2.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:747   UCCAAUCCCACUCAAUCCACAUGG   770

2.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:100   UCCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:91   UCCAAUCCCACUCAAUCCACAUGG   114

2.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:82   UCCAAUCCCACUCAAUCCACAUGG   105

2.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|||||||||||||||=
targets:81   UCCAAUCCCACUCAAUCCACAUGG   104

2.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:62   UCCAAUCCCGCUCAAUCCACAUGG   85

3.0 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:2906   UCCAAUCCCGCUCAAUCCACAUGG   2929

3.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:2802   UCCAAUCCCGCUCAAUCCACAUGG   2825

3.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:2142   UCCAAUCCCGCUCAAUCCACAUGG   2165

3.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:2031   UCCAAUCCCGCUCAAUCCACAUGG   2054

3.0 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:2049   UCCAAUCCCGCUCAAUCCACAUGG   2072

3.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:1954   UCCAAUCCCGCUCAAUCCACAUGG   1977

3.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:1888   UCCAAUCCCGCUCAAUCCACAUGG   1911

3.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:1621   UCCAAUCCCGCUCAAUCCACAUGG   1644

3.0 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:1417   UUCAAUCCCACUCAAUCCACAUGG   1440

2.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
BT068797.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153

3.0 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |||||||*|=|||||||||||||=
targets:1130   UCCAAUCCCGCUCAAUCCACAUGG   1153

3.0 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149

2.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:1126   UUCAAUCCCACUCAAUCCACAUGG   1149

2.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
EU942673.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:93   UUCAAUCCCACUCAAUCCACAUGG   116

2.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |=|||||*|||||||||||||||=
targets:100   UUCAAUCCCACUCAAUCCACAUGG   123

2.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
EU957741.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  *||||||||||*|||||||||||=
targets:1401   CCCAAUCUCACCCAAUCCACAUGG   1424

2.5 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
EU957033.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  *||||||||||*|||||||||||=
targets:1400   CCCAAUCUCACCCAAUCCACAUGG   1423

2.5 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  *=|||||*|||||||||||||||=
targets:4059   CUCAAUCCCACUCAAUCCACAUGG   4082

2.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
EU960921.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |==||||*=||||||||||||||*
targets:1252   UUUAAUCCUACUCAAUCCACAUGC   1275

3.0 Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds NA coding protein psRNATarget
NM_001279564.2
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |==||||*=||||||||||||||*
targets:1249   UUUAAUCCUACUCAAUCCACAUGC   1272

3.0 Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA NA coding protein psRNATarget
EU968756.1
ncRNA:24   AGGUUAGAGUGAGUUAGGUGUACU   1
  |==||||*=||||||||||||||*
targets:928   UUUAAUCCUACUCAAUCCACAUGC   951

3.0 Zea mays clone 323940 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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