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BaseInfo

ncRNA ID novel_zma_miR4853
Species Zea mays
Class miRNA
Genome position Chr3:584253-584303 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 28 - CACAGGCGCGGACGGUCUGCGACC - 51
Stem-loop(if miRNA) -CA    -       G     C A  
   CAGG CGCGGAC GUCUG G CCA
   |||| ||||||| ||||| | ||A
   GUCC GCGUCUG CAGGC C GGG
GCG    A       G     - -  
Stem-loop sequence CACAGGCGCGGACGGUCUGCGACCAAGGGCCGGACGGUCUGCGACCUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163540.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=|||||||||||||||||
targets:40   GACCGCGGACCGUCCGCGCCUGUG   63

1.0 Sequence 1204 from Patent EP2559767 NA coding protein psRNATarget
HI403079.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=|||||||||||||||||
targets:40   GACCGCGGACCGUCCGCGCCUGUG   63

1.0 Sequence 1204 from Patent EP2074227 NA coding protein psRNATarget
LQ235209.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=|||||||||||||||||
targets:40   GACCGCGGACCGUCCGCGCCUGUG   63

1.0 Sequence 1204 from Patent EP2985353 NA coding protein psRNATarget
JB170229.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||*|=||||||||||||||*||
targets:39   GGUCACGGACCGUCCGCGCCUCUG   62

2.5 Sequence 7893 from Patent EP2559767 NA coding protein psRNATarget
LQ241898.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||*|=||||||||||||||*||
targets:39   GGUCACGGACCGUCCGCGCCUCUG   62

2.5 Sequence 7893 from Patent EP2985353 NA coding protein psRNATarget
HI409768.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||*|=||||||||||||||*||
targets:39   GGUCACGGACCGUCCGCGCCUCUG   62

2.5 Sequence 7893 from Patent EP2074227 NA coding protein psRNATarget
EU943239.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|||||*|||||||||||||
targets:320   GGUC-CAGACGGUCCGCGCCUGUG   342

1.0 Zea mays clone 1589479 mRNA sequence NA coding protein psRNATarget
EU949855.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:408   GGUC-CGGACAGUCCGCGCCUGUG   430

2.0 Zea mays clone 449025 mRNA sequence NA coding protein psRNATarget
EU948904.1
ncRNA:24   CCA------GCGUCUGGCAGGCGCGGACAC   1
  |||------|||=||||||||||*||||||
targets:514   GGUAGACAACGCGGACCGUCCGCCCCUGUG   543

2.5 Zea mays clone 389441 mRNA sequence NA coding protein psRNATarget
EU949034.1
ncRNA:24   CCA------GCGUCUGGCAGGCGCGGACAC   1
  |||------|||=||||||||||*||||||
targets:515   GGUAGACAACGCGGACCGUCCGCCCCUGUG   544

2.5 Zea mays clone 394358 mRNA sequence NA coding protein psRNATarget
EU974386.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:842   GGUC-CGGACGGUCCGCGCCUGUG   864

2.0 Zea mays clone 447822 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001174686.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:1433   GGUC-CGGACGGUCCGCGCCUGUG   1455

2.0 Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA NA coding protein psRNATarget
BT062568.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:1433   GGUC-CGGACGGUCCGCGCCUGUG   1455

2.0 Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds NA coding protein psRNATarget
BT018646.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:1568   GGUC-CGGACGGUCCGCGCCUGUG   1590

2.0 Zea mays clone EL01N0505C04.d mRNA sequence NA coding protein psRNATarget
NM_001149438.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:1917   GGUC-CGGACAGUCCGCGCCUGUG   1939

2.0 Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA NA coding protein psRNATarget
EU955374.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:1917   GGUC-CGGACAGUCCGCGCCUGUG   1939

2.0 Zea mays clone 1529849 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008658262.2
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:2665   GGUC-CGGACAGUCCGCGCCUGUG   2687

2.0 PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658263.2
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ||||-|=|||*|||||||||||||
targets:2766   GGUC-CGGACAGUCCGCGCCUGUG   2788

2.0 PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X2, mRNA NA coding protein psRNATarget
EZ067064.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=||||||||||*||||||
targets:28   GCGCGCGGACCGUCCGCCCCUGUG   51

2.5 TSA: Zea mays contig02698, mRNA sequence NA coding protein psRNATarget
NM_001196968.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=||||||||||*||||||
targets:1340   GCGCGCGGACCGUCCGCCCCUGUG   1363

2.5 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
BT088349.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  |**|||=||||||||||*||||||
targets:1340   GCGCGCGGACCGUCCGCCCCUGUG   1363

2.5 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
BT055995.2
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  ***=*|=|||||||||=|||||||
targets:340   UUCUUCGGACCGUCCGUGCCUGUG   363

2.5 Zea mays full-length cDNA clone ZM_BFc0107G24 mRNA, complete cds NA coding protein psRNATarget
EU964369.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  *||-|||||*||||||||||*|||
targets:1089   UGU-GCAGAACGUCCGCGCCGGUG   1111

2.5 Zea mays clone 278344 oxidoreductase mRNA, complete cds NA coding protein psRNATarget
NM_001157574.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  *||-|||||*||||||||||*|||
targets:1098   UGU-GCAGAACGUCCGCGCCGGUG   1120

2.5 Zea mays oxidoreductase (LOC100284679), mRNA NA coding protein psRNATarget
EU969285.1
ncRNA:24   CCAGCGUCUGGCAGGCGCGGACAC   1
  *||-|||||*||||||||||*|||
targets:1098   UGU-GCAGAACGUCCGCGCCGGUG   1120

2.5 Zea mays clone 328029 oxidoreductase mRNA, complete cds NA coding protein psRNATarget
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