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BaseInfo

ncRNA ID	novel_zma_miR4851
Species	Zea mays
Class	miRNA
Genome position	Chr6:134460167-134460307 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AGGGCUUGUUCGGUUAUUUGCAAU - 24
Stem-loop(if miRNA)	--               -AU  G                GA         UAUGGAUUGGA    A      -   G   AGGGCUUGUUCGGUU   UU CAAUCCAUAUGGAUUG  GGGGAUUGA           GGGG UUUUGA CUU C   |||||||||||||||   || ||||||||||||||||  |||||||||           |||| |||||| |||   UCCCGAACAAGCCAA   GG GUUAGGUAUACCUAAC  CCCCUAACU           CCCC AAAAUU GGG U AA               GAU  G                UC         -----------    C      A   A
Stem-loop sequence	AGGGCUUGUUCGGUUAUUUGCAAUCCAUAUGGAUUGGAGGGGAUUGAUAUGGAUUGGAGGGGAUUUUGACUUGCUAGGGAUUAAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ092886.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:91   AUUGAAAAUAACCGAACAAGCCCU   114 Target Full Sequence	0.0	TSA: Zea mays contig28535, mRNA sequence	NA	coding protein	psRNATarget
LQ237955.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:116   AUUGGAAAUAACCGAACAAGCCCU   139 Target Full Sequence	0.0	Sequence 3950 from Patent EP2985353	NA	coding protein	psRNATarget
JB166286.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:116   AUUGGAAAUAACCGAACAAGCCCU   139 Target Full Sequence	0.0	Sequence 3950 from Patent EP2559767	NA	coding protein	psRNATarget
HI405825.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:116   AUUGGAAAUAACCGAACAAGCCCU   139 Target Full Sequence	0.0	Sequence 3950 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:468   AUUGAAAAUAACCGAACAAGCCCU   491 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:807   AUUGAAAAUAACCGAACAAGCCCU   830 Target Full Sequence	0.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:859   AUUGAAAAUAACCGAACAAGCCCU   882 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:921   AUUGAAAAUAACCGAACAAGCCCU   944 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:869   AUUGAAAAUAACCGAACAAGCCCU   892 Target Full Sequence	0.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:867   AUUGAAAAUAACCGAACAAGCCCU   890 Target Full Sequence	0.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:867   AUUGAAAAUAACCGAACAAGCCCU   890 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:868   AUUGAAAAUAACCGAACAAGCCCU   891 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:911   AUUGAAAAUAACCGAACAAGCCCU   934 Target Full Sequence	0.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:911   AUUGAAAAUAACCGAACAAGCCCU   934 Target Full Sequence	0.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:940   AUUGAAAAUAACCGAACAAGCCCU   963 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1070   AUUGAAAAUAACCGAACAAGCCCU   1093 Target Full Sequence	0.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1183   AUUGAAAAUAACCGAACAAGCCCU   1206 Target Full Sequence	0.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1108   AUUGAAAAUAACCGAACAAGCCCU   1131 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1221   AUUGAAAAUAACCGAACAAGCCCU   1244 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1444   AUUGGAAAUAACCGAACAAGCCCU   1467 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1488   AUUGGAAAUAACCGAACAAGCCCU   1511 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1506   AUUGGAAAUAACCGAACAAGCCCU   1529 Target Full Sequence	0.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1520   AUUGGAAAUAACCGAACAAGCCCU   1543 Target Full Sequence	0.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1520   AUUGGAAAUAACCGAACAAGCCCU   1543 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:45   AUUGAAAAUAACCGAACAAGCCCU   68 Target Full Sequence	0.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:1721   AUUGAAAAUAACCGAACAAGCCCU   1744 Target Full Sequence	0.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:2003   AUUGAAAAUAACCGAACAAGCCCU   2026 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:2003   AUUGAAAAUAACCGAACAAGCCCU   2026 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:999   AUUGAAAAUAACCGAACAAGCCCU   1022 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||| targets:3143   AUUGAAAAUAACCGAACAAGCCCU   3166 Target Full Sequence	0.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
HI405827.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:112   AUUGGGAAUAACCGAACAAGCCCU   135 Target Full Sequence	1.0	Sequence 3952 from Patent EP2074227	NA	coding protein	psRNATarget
JB166288.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:112   AUUGGGAAUAACCGAACAAGCCCU   135 Target Full Sequence	1.0	Sequence 3952 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237957.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:112   AUUGGGAAUAACCGAACAAGCCCU   135 Target Full Sequence	1.0	Sequence 3952 from Patent EP2985353	NA	coding protein	psRNATarget
JB166337.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:114   AUUGGGAAUAACCGAACAAGCCCU   137 Target Full Sequence	1.0	Sequence 4001 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238006.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:114   AUUGGGAAUAACCGAACAAGCCCU   137 Target Full Sequence	1.0	Sequence 4001 from Patent EP2985353	NA	coding protein	psRNATarget
HI405876.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:114   AUUGGGAAUAACCGAACAAGCCCU   137 Target Full Sequence	1.0	Sequence 4001 from Patent EP2074227	NA	coding protein	psRNATarget
HI405837.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:115   AUUGAGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3962 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237967.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:115   AUUGAGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3962 from Patent EP2985353	NA	coding protein	psRNATarget
JB166298.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:115   AUUGAGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3962 from Patent EP2559767	NA	coding protein	psRNATarget
JB166342.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4006 from Patent EP2559767	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
HI405880.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238010.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4005 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238011.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4006 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237962.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3957 from Patent EP2985353	NA	coding protein	psRNATarget
JB166293.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3957 from Patent EP2559767	NA	coding protein	psRNATarget
HI405881.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4006 from Patent EP2074227	NA	coding protein	psRNATarget
HI405832.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3957 from Patent EP2074227	NA	coding protein	psRNATarget
JB166341.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 4005 from Patent EP2559767	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:116   AUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
JB166347.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:119   AUUGGGAAUAACCGAACAAGCCCU   142 Target Full Sequence	1.0	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:119   AUUGGGAAUAACCGAACAAGCCCU   142 Target Full Sequence	1.0	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
HI405886.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:119   AUUGGGAAUAACCGAACAAGCCCU   142 Target Full Sequence	1.0	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
EZ110342.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||-||||||||||||||||||| targets:36   AUUG-AAAUAACCGAACAAGCCCU   58 Target Full Sequence	0.0	TSA: Zea mays contig46002, mRNA sequence	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:282   AUUGGGAAUAACCGAACAAGCCCU   305 Target Full Sequence	1.0	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
EU957313.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:760   AUUGGGAAUAACCGAACAAGCCCU   783 Target Full Sequence	1.0	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:760   AUUGGGAAUAACCGAACAAGCCCU   783 Target Full Sequence	1.0	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:793   AUUGGGAAUAACCGAACAAGCCCU   816 Target Full Sequence	1.0	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:793   AUUGGGAAUAACCGAACAAGCCCU   816 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
BT018247.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:484   AUUGGGAAUAACCGAACAAGCCCU   507 Target Full Sequence	1.0	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1036   AUUGGGAAUAACCGAACAAGCCCU   1059 Target Full Sequence	1.0	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT062563.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1315   AUUGGGAAUAACCGAACAAGCCCU   1338 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1315   AUUGGGAAUAACCGAACAAGCCCU   1338 Target Full Sequence	1.0	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1545   AUUGGGAAUAACCGAACAAGCCCU   1568 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
BT066364.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1545   AUUGGGAAUAACCGAACAAGCCCU   1568 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:1822   AUUGGGAAUAACCGAACAAGCCCU   1845 Target Full Sequence	1.0	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970939.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:2129   AUUGGGAAUAACCGAACAAGCCCU   2152 Target Full Sequence	1.0	Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:2578   AUUGGGAAUAACCGAACAAGCCCU   2601 Target Full Sequence	1.0	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||||| targets:2558   AUUGGGAAUAACCGAACAAGCCCU   2581 Target Full Sequence	1.0	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679798.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||=|||||||||||||||*||| targets:167   AUUGUAAAUAACCGAACAAGACCU   190 Target Full Sequence	1.5	PREDICTED: Zea mays receptor-like protein kinase HSL1 (LOC103652818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||||||* targets:324   AUUGAAAAUAACCGAACAAGCCCG   347 Target Full Sequence	1.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
LQ237978.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||||=| targets:116   AUUGGGAAUAACCGAACAAGCCUU   139 Target Full Sequence	2.5	Sequence 3973 from Patent EP2985353	NA	coding protein	psRNATarget
HI405848.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||||=| targets:116   AUUGGGAAUAACCGAACAAGCCUU   139 Target Full Sequence	2.5	Sequence 3973 from Patent EP2074227	NA	coding protein	psRNATarget
JB166309.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||||=| targets:116   AUUGGGAAUAACCGAACAAGCCUU   139 Target Full Sequence	2.5	Sequence 3973 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239438.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||=|| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2985353	NA	coding protein	psRNATarget
HI407308.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||=|| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2074227	NA	coding protein	psRNATarget
JB167769.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||||||||||=|| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2559767	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||=||||||||||| targets:256   AUUGGGAAUAACUGAACAAGCCCU   279 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||=||||||||||| targets:256   AUUGGGAAUAACUGAACAAGCCCU   279 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||=||||||||||| targets:256   AUUGGGAAUAACUGAACAAGCCCU   279 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
EZ113075.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||=||||||||||| targets:9   AUUGAGAAUAACUGAACAAGCCCU   32 Target Full Sequence	2.5	TSA: Zea mays contig48736, mRNA sequence	NA	coding protein	psRNATarget
BT068791.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||=||| targets:1369   AUUGGGAAUAACCGAACAAGUCCU   1392 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
HI405844.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:115   UUUGGGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3969 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237974.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:115   UUUGGGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3969 from Patent EP2985353	NA	coding protein	psRNATarget
JB166305.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:115   UUUGGGAAUAACCGAACAAGCCCU   138 Target Full Sequence	1.0	Sequence 3969 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237965.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3960 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237981.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3976 from Patent EP2985353	NA	coding protein	psRNATarget
HI405851.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3976 from Patent EP2074227	NA	coding protein	psRNATarget
JB166296.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3960 from Patent EP2559767	NA	coding protein	psRNATarget
HI405835.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3960 from Patent EP2074227	NA	coding protein	psRNATarget
JB166312.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:116   UUUGGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3976 from Patent EP2559767	NA	coding protein	psRNATarget
EU968099.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:249   UUUGGGAAUAACCGAACAAGCCCU   272 Target Full Sequence	1.0	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:1539   UUUGGGAAUAACCGAACAAGCCCU   1562 Target Full Sequence	1.0	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:312   UUUGGGAAUAACCGAACAAGCCCU   335 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:312   UUUGGGAAUAACCGAACAAGCCCU   335 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:312   UUUGGGAAUAACCGAACAAGCCCU   335 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:312   UUUGGGAAUAACCGAACAAGCCCU   335 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   *|||*=|||||||||||||||||| targets:2667   UUUGGGAAUAACCGAACAAGCCCU   2690 Target Full Sequence	1.0	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||||||||*|||| targets:722   AUUGAAAAUAACCGAACAAACCCU   745 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*||||||||*|||||||||| targets:1031   AUUGAAAAUAACCAAACAAGCCCU   1054 Target Full Sequence	1.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*|||||||||||||||*||| targets:1565   AUUGGAAAUAACCGAACAAGGCCU   1588 Target Full Sequence	1.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
BT039499.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*|||||||||||||||*||| targets:1565   AUUGGAAAUAACCGAACAAGGCCU   1588 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**||||||||||||||||||| targets:1653   AUUAAAAAUAACCGAACAAGCCCU   1676 Target Full Sequence	0.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UAACGUU-UAUUGGCUUGUUCGGGA   1   ||||*=|-||||||||||||||||| targets:1992   AUUGGGAUAUAACCGAACAAGCCCU   2016 Target Full Sequence	3.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405823.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:116   AUUAGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3948 from Patent EP2074227	NA	coding protein	psRNATarget
JB166284.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:116   AUUAGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3948 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237953.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:116   AUUAGGAAUAACCGAACAAGCCCU   139 Target Full Sequence	1.0	Sequence 3948 from Patent EP2985353	NA	coding protein	psRNATarget
JB163448.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:125   AUUGGGAAUAACCGAACAAGGCCU   148 Target Full Sequence	2.5	Sequence 1112 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235117.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:125   AUUGGGAAUAACCGAACAAGGCCU   148 Target Full Sequence	2.5	Sequence 1112 from Patent EP2985353	NA	coding protein	psRNATarget
HI402987.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:125   AUUGGGAAUAACCGAACAAGGCCU   148 Target Full Sequence	2.5	Sequence 1112 from Patent EP2074227	NA	coding protein	psRNATarget
AY111036.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:199   AUUGGGAAUAACCGAACAAGGCCU   222 Target Full Sequence	2.5	Zea mays CL1582_4 mRNA sequence	NA	coding protein	psRNATarget
BT070056.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:865   AUUGGGAAUAACCGAACAAGACCU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds	NA	coding protein	psRNATarget
AY103687.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:1176   AUUGGGAAUAACCGAACAAGACCU   1199 Target Full Sequence	2.5	Zea mays PCO106710 mRNA sequence	NA	coding protein	psRNATarget
BT018592.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||*||||||||||| targets:1121   AUUGGGAAUAACGGAACAAGCCCU   1144 Target Full Sequence	2.5	Zea mays clone EL01N0447E06.d mRNA sequence	NA	coding protein	psRNATarget
BT086570.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:240   AUUGGGAAUAACCGAACAAGGCCU   263 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds	NA	coding protein	psRNATarget
AY109413.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=||||||||||||||*||| targets:1672   AUUGGGAAUAACCGAACAAGGCCU   1695 Target Full Sequence	2.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020538542.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   ||||*=|||||||*|||||||||| targets:84   AUUGAGAAUAACCAAACAAGCCCU   107 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103628650 (LOC103628650), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:2875   AUUAGGAAUAACCGAACAAGCCCU   2898 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:2884   AUUAGGAAUAACCGAACAAGCCCU   2907 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3710   AUUAGGAAUAACCGAACAAGCCCU   3733 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3734   AUUAGGAAUAACCGAACAAGCCCU   3757 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3788   AUUAGGAAUAACCGAACAAGCCCU   3811 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3782   AUUAGGAAUAACCGAACAAGCCCU   3805 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3790   AUUAGGAAUAACCGAACAAGCCCU   3813 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3777   AUUAGGAAUAACCGAACAAGCCCU   3800 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:3852   AUUAGGAAUAACCGAACAAGCCCU   3875 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:4176   AUUAGGAAUAACCGAACAAGCCCU   4199 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   |||**=|||||||||||||||||| targets:4272   AUUAGGAAUAACCGAACAAGCCCU   4295 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ053255.1	ncRNA:24   UAACGUUUAUUGGCUUGUUCGGGA   1   =||-||=||||||||||||||||* targets:196   GUU-CAGAUAACCGAACAAGCCCA   218 Target Full Sequence	2.0	TSA: Zea mays contig54376, mRNA sequence	NA	coding protein	psRNATarget
EZ062569.1	ncRNA:21   CGUUUAUUGGCUUGUUCGGGA   1   |*||||||||||||||||||| targets:1   GGAAAUAACCGAACAAGCCCU   21 Target Full Sequence	0.0	TSA: Zea mays contig63691, mRNA sequence	NA	coding protein	psRNATarget