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BaseInfo

ncRNA ID novel_zma_miR4846
Species Zea mays
Class miRNA
Genome position Chr6:42140342-42140405 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 19
Mature sequence(if miRNA) 1 - AUCGGAGUAGCGCAGCGGA - 19
Stem-loop(if miRNA) -    -  UG  ---- GCGGAAGGUGUGGGUGCC
 CGCC UG  CC    U                  G
 |||| ||  ||    |
 GGCG CG  CG    G                  C
A    A  --  AUGA GCUAGUGAGGUGUGCGGG
Stem-loop sequence CGCCUGUGCCUGCGGAAGGUGUGGGUGCCGCGGGCGUGUGGAGUGAUCGGAGUAGCGCAGCGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658889.2
ncRNA:19   AGGCGACGCGAUGAGGCUA   1
  ||||||||*|||||||||*
targets:1870   UCCGCUGCUCUACUCCGAG   1888

2.5 PREDICTED: Zea mays U-box domain-containing protein 16 (LOC103636544), mRNA NA coding protein psRNATarget
EZ079624.1
ncRNA:19   AGGCGACGCGAUGAGGCUA   1
  |*|*=||||||||||||||
targets:112   UACUUUGCGCUACUCCGAU   130

3.0 TSA: Zea mays contig15263, mRNA sequence NA coding protein psRNATarget
BT055567.2
ncRNA:19   AGGCGACGCGAUGAGGCUA   1
  |*|*=||||||||||||||
targets:732   UACUUUGCGCUACUCCGAU   750

3.0 Zea mays full-length cDNA clone ZM_BFc0030I02 mRNA, complete cds NA coding protein psRNATarget