Search result

BaseInfo

ncRNA ID	novel_zma_miR4844
Species	Zea mays
Class	miRNA
Genome position	Chr6:33980786-33980905 [+]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	1 - AGGGCUAGUUUGGCAACCUCAUUU - 24
Stem-loop(if miRNA)	--      A      C    U  U       U   A      A      AA   A    GA   AGGGCU GUUUGG AACC CA UUUUCUA GGG UUUUCA UUUCCA  UGG AAAU  A   |||||| |||||| |||| || ||||||| ||| |||||| ||||||  ||| ||||   UCCCGA CAAACC UUGG GU AAAGGGU UCC AAAAGU AAGGGU  ACC UUUA  C AA      C      C    U  U       U   A      A      --   C    AU
Stem-loop sequence	AGGGCUAGUUUGGCAACCUCAUUUUUCUAUGGGAUUUUCAAUUUCCAAAUGGAAAAUGAACUAAUUUCCCAUGGGAAAUGAAAAACCUUUGGGAAAUUGUGGUUCCCAAACCAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956611.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|||||||||||||||||| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	1.0	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
LQ238951.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	1.0	Sequence 4946 from Patent EP2985353	NA	coding protein	psRNATarget
JB167282.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	1.0	Sequence 4946 from Patent EP2559767	NA	coding protein	psRNATarget
HI406821.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	1.0	Sequence 4946 from Patent EP2074227	NA	coding protein	psRNATarget
EU962589.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||*|||||||||||||||||||| targets:852   AAACGAGGUUGCCAAACUAGCCCU   875 Target Full Sequence	0.0	Zea mays clone 244010 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|||||=||||||| targets:122   AAAUGAGGUUUCCAAAUUAGCCCU   145 Target Full Sequence	2.5	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
EU942948.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|=||||||||||| targets:39   AAAUGAGGUUCCUAAACUAGCCCU   62 Target Full Sequence	2.5	Zea mays clone 1547322 mRNA sequence	NA	coding protein	psRNATarget
EU947743.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|||||||||||||||*|| targets:118   AAAUGGGGUUGCCAAACUAGCACU   141 Target Full Sequence	2.5	Zea mays clone 356079 mRNA sequence	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=||||*||||||||||||| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	2.0	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
EU949735.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|||||||||||||||*|| targets:169   AAAUGGGGUUGCCAAACUAGCACU   192 Target Full Sequence	2.5	Zea mays clone 442739 mRNA sequence	NA	coding protein	psRNATarget
EU960700.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=||||||||||||*||||| targets:2   AAAUGGGGUUGCCAAACUUGCCCU   25 Target Full Sequence	2.5	Zea mays clone 227687 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT016725.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||*||||||||||||||||=| targets:947   AAAUGUGGUUGCCAAACUAGCCUU   970 Target Full Sequence	2.5	Zea mays clone Contig558 mRNA sequence	NA	coding protein	psRNATarget
XM_020540400.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:633   AAAUGGGUUUGCCAAACUAGCCCU   656 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020540401.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:661   AAAUGGGUUUGCCAAACUAGCCCU   684 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020540399.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:957   AAAUGGGUUUGCCAAACUAGCCCU   980 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020540398.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:1113   AAAUGGGUUUGCCAAACUAGCCCU   1136 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020540395.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:1126   AAAUGGGUUUGCCAAACUAGCCCU   1149 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546252.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*=|||||||||||| targets:1876   AAAUGAGGUUAUCAAACUAGCCCU   1899 Target Full Sequence	2.5	PREDICTED: Zea mays protein high chlorophyll fluorescent 107 (LOC103634571), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546250.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*=|||||||||||| targets:2020   AAAUGAGGUUAUCAAACUAGCCCU   2043 Target Full Sequence	2.5	PREDICTED: Zea mays protein high chlorophyll fluorescent 107 (LOC103634571), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540396.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*|||||||||||||||| targets:1441   AAAUGGGUUUGCCAAACUAGCCCU   1464 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100276461), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546246.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*=|||||||||||| targets:2108   AAAUGAGGUUAUCAAACUAGCCCU   2131 Target Full Sequence	2.5	PREDICTED: Zea mays protein high chlorophyll fluorescent 107 (LOC103634571), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054753.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|=||||||||||| targets:2408   AAAUGAGGUUCCUAAACUAGCCCU   2431 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0025A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152676.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|=||||||||||| targets:2408   AAAUGAGGUUCCUAAACUAGCCCU   2431 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279717 (cl715_-2a), mRNA	NA	coding protein	psRNATarget
XM_020553278.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|=||||||||||| targets:2485   AAAUGAGGUUCCUAAACUAGCCCU   2508 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553277.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*|=||||||||||| targets:2496   AAAUGAGGUUCCUAAACUAGCCCU   2519 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100279717 (cl715_-2a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=||||*||||||||||||| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652590.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||* targets:972   AAAUGAGGUUUCCAAACUAGCCCC   995 Target Full Sequence	2.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008652589.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||* targets:999   AAAUGAGGUUUCCAAACUAGCCCC   1022 Target Full Sequence	2.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT034002.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||* targets:1017   AAAUGAGGUUUCCAAACUAGCCCC   1040 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044B05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137218.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||* targets:1017   AAAUGAGGUUUCCAAACUAGCCCC   1040 Target Full Sequence	2.0	Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), mRNA	NA	coding protein	psRNATarget
XM_008652587.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||||||||*||||||||||||* targets:1077   AAAUGAGGUUUCCAAACUAGCCCC   1100 Target Full Sequence	2.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001350117.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   =|||||||||*|=||||||||||| targets:3268   GAAUGAGGUUUCUAAACUAGCCCU   3291 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283404 (pco107270a), mRNA	NA	coding protein	psRNATarget
BT069551.1	ncRNA:24   UUUA-CUCCAACGGUUUGAUCGGGA   1   ||||-||||||*||||||||||||| targets:320   AAAUUGAGGUUCCCAAACUAGCCCU   344 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=||||*||||||||||||* targets:5579   AAAUGGGGUUCCCAAACUAGCCCG   5602 Target Full Sequence	3.0	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542483.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||**||||||||||||||||| targets:3186   AAAUGCUGUUGCCAAACUAGCCCU   3209 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542482.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||**||||||||||||||||| targets:3675   AAAUGCUGUUGCCAAACUAGCCCU   3698 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542481.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||**||||||||||||||||| targets:3687   AAAUGCUGUUGCCAAACUAGCCCU   3710 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542480.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||**||||||||||||||||| targets:3723   AAAUGCUGUUGCCAAACUAGCCCU   3746 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680878.2	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||-||-||||||||||||||||| targets:1604   AAAU-AGUGUUGCCAAACUAGCCCU   1627 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin protein ligase RIE1 (LOC103654076), mRNA	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	3.0	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	3.0	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	3.0	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:324   AAAUGGUGUUACCAAACUAGCCCU   347 Target Full Sequence	3.0	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
BT018700.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1222   AAAUAGGGUUGCCAAACUAGCCAU   1245 Target Full Sequence	2.5	Zea mays clone EL01N0515A01.d mRNA sequence	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||*||||||||||||| targets:1306   AAAUAGGGUUUCCAAACUAGCCCU   1329 Target Full Sequence	2.0	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
NM_001175321.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1152   AAAUAGGGUUGCCAAACUAGCCAU   1175 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT064838.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1152   AAAUAGGGUUGCCAAACUAGCCAU   1175 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0201G15 mRNA, complete cds	NA	coding protein	psRNATarget
EU960758.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=|*|||||||||||||||| targets:812   AAAUUGGAUUGCCAAACUAGCCCU   835 Target Full Sequence	2.0	Zea mays clone 228354 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548086.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||*||| targets:1324   AAAUAGGGUUGCCAAACUAGACCU   1347 Target Full Sequence	2.5	PREDICTED: Zea mays protein PELOTA 1 (LOC103645815), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551310.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1093   AAAUAGGGUUGCCAAACUAGCCAU   1116 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	3.0	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
XM_020551308.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1260   AAAUAGGGUUGCCAAACUAGCCAU   1283 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678410.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1339   AAAUAGGGUUGCCAAACUAGCCAU   1362 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	3.0	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139247.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1320   AAAUAGGGUUGCCAAACUAGCCAU   1343 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 1, mRNA	NA	coding protein	psRNATarget
XM_020551309.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||||*| targets:1184   AAAUAGGGUUGCCAAACUAGCCAU   1207 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001351109.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||*=||||||||||||||*||| targets:1580   AAAUAGGGUUGCCAAACUAGACCU   1603 Target Full Sequence	2.5	Zea mays protein PELOTA 1 (LOC103645815), mRNA	NA	coding protein	psRNATarget
XM_020544055.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*||*||||||||||||| targets:1888   AAAUGGGAUUUCCAAACUAGCCCU   1911 Target Full Sequence	3.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662239.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=|*||*||||||||||||| targets:1908   AAAUGGGAUUUCCAAACUAGCCCU   1931 Target Full Sequence	3.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	3.0	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |||||=*|||*||||||||||||| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UUUA-CUCCAACGGUUUGAUCGGGA   1   ||||-|=||||*||||||||||||* targets:1778   AAAUUGGGGUUCCCAAACUAGCCCK   1802 Target Full Sequence	3.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
BT019260.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||-|||||*|||||=||||||| targets:72   AAAU-AGGUUCCCAAAUUAGCCCU   94 Target Full Sequence	2.5	Zea mays clone Contig933.F mRNA sequence	NA	coding protein	psRNATarget
AY110938.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ***||||||*|||||||||||||| targets:356   NNNUGAGGUGGCCAAACUAGCCCU   379 Target Full Sequence	1.0	Zea mays CL2843_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1470   AAAUUAGUGUUCCCAAACUAGCCCU   1494 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1513   AAAUUAGUGUUCCCAAACUAGCCCU   1537 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1514   AAAUUAGUGUUCCCAAACUAGCCCU   1538 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1557   AAAUUAGUGUUCCCAAACUAGCCCU   1581 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1643   AAAUUAGUGUUCCCAAACUAGCCCU   1667 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665186.2	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   ||||*||-|||*||||||||||||| targets:1   AAAUUAGUGUUCCCAAACUAGCCCU   25 Target Full Sequence	3.0	PREDICTED: Zea mays probable galacturonosyltransferase-like 3 (LOC103641870), mRNA	NA	coding protein	psRNATarget
XM_020540939.1	ncRNA:24   UUUACUC-CAACGGUUUGAUCGGGA   1   |||**||-||||||||||||||||| targets:3818   AAAACAGAGUUGCCAAACUAGCCCU   3842 Target Full Sequence	2.0	PREDICTED: Zea mays leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (LOC109940759), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |*||||||||*|||||*||||||| targets:126   AUAUGAGGUUCCCAAAGUAGCCCU   149 Target Full Sequence	2.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
NM_001165553.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||**|||||*|||||||||||| targets:51   AAAUACGGUUGACAAACUAGCCCU   74 Target Full Sequence	2.5	Zea mays RNA polymerase II transcriptional coactivator KIWI (LOC100304040), mRNA	NA	coding protein	psRNATarget
EU967387.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||**|||||*|||||||||||| targets:51   AAAUACGGUUGACAAACUAGCCCU   74 Target Full Sequence	2.5	Zea mays clone 302264 RNA polymerase II transcriptional coactivator KIWI mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553427.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ||||**|||||*|||||||||||| targets:52   AAAUACGGUUGACAAACUAGCCCU   75 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100286301 (cl190_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY109377.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   ***|||||||*|=||||||||||| targets:2488   NNNUGAGGUUCCUAAACUAGCCCU   2511 Target Full Sequence	2.5	Zea mays CL715_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |*||||||||*|||||*||||||| targets:2460   AUAUGAGGUUCCCAAAGUAGCCCU   2483 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |*||||||||*|||||*||||||| targets:5237   AUAUGAGGUUCCCAAAGUAGCCCU   5260 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   UUUACUCCAACGGUUUGAUCGGGA   1   |*||||||||*|||||*||||||| targets:5371   AUAUGAGGUUCCCAAAGUAGCCCU   5394 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget