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BaseInfo

ncRNA ID novel_zma_miR4843
Species Zea mays
Class miRNA
Genome position Chr6:85801513-85801618 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 23
Mature sequence(if miRNA) 84 - UUCCUAGAGGAGGCCAUAGAAAG - 106
Stem-loop(if miRNA) --          A  C A   A       C    -CAU        C   G  G
  UUCCUAGAGG GG C UAG AAGUUAG UAUG    GCUAACUU CUA AG A
  |||||||||| || | ||| ||||||| ||||    |||||||| ||| ||
  AAGGAUCUCC CC G AUC UUCAAUC AUAC    CGAUUGAA GAU UC A
UG          G  A C   C       -    CCGC        A   G  G
Stem-loop sequence UUCCUAGAGGAGGCCAUAGAAAGUUAGCUAUGCAUGCUAACUUCCUAGAGGAAGCUGUAGAAAGUUAGCCGCCCAUACUAACUUCCUACGACCGCCUCUAGGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:23   GAAAGAUACCGGAGGAGAUCCUU   1
  |||||||*||||||||||||*||
targets:1135   CUUUCUACGGCCUCCUCUAGAAA   1157

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:23   GAAAGAUACCGGAGGAGAUCCUU   1
  |||*|||*|*|||||||||||||
targets:1176   CUUCCUACGACCUCCUCUAGGAA   1198

2.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget