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BaseInfo

ncRNA ID	novel_zma_miR4842
Species	Zea mays
Class	miRNA
Genome position	Chr3:6928580-6928680 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR3385575;SRR3385651;SRR3385660;SRR4237223;SRR4237225;SRR5105963
Length	22
Mature sequence(if miRNA)	1 - GCUCACUUCUCUCUCUGUCAGC - 22
Stem-loop(if miRNA)	--       -     -        A      GCCU   UU      UGUAUGA  G   UGACAGA AGAGA GUGAGCAC CAUGGU    UUC  GCAUGA       UC A   ||||||| ||||| |||||||| ||||||    |||  ||||||       ||   ACUGUCU UCUCU CACUCGUG GUAUCG    AAG  CGUACU       AG G CG       C     U        C      ----   CU      -----UG  A
Stem-loop sequence	UGACAGAAGAGAGUGAGCACACAUGGUGCCUUUCUUGCAUGAUGUAUGAUCGAGAGAGUUCAUGCUCGAAGCUAUGCGUGCUCACUUCUCUCUCUGUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240713.1	ncRNA:22   CGACUGUCUCUCUCUUCACUCG   1   |||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2985353	NA	coding protein	psRNATarget
HI408583.1	ncRNA:22   CGACUGUCUCUCUCUUCACUCG   1   |||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2074227	NA	coding protein	psRNATarget
JB169044.1	ncRNA:22   CGACUGUCUCUCUCUUCACUCG   1   |||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546680.1	ncRNA:22   CGACUGUCUCUCUCUUCACUCG   1   *|*||*|||||||||||||||= targets:126   CCAGAGAGAGAGAGAAGUGAGU   147 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 23-like (LOC103643284), mRNA	NA	coding protein	psRNATarget
XM_020539323.1	ncRNA:22   CGACUGUCUCUCUCUUCACUCG   1   ***||*||||=||||||||||| targets:191   AGAGAGAGAGGGAGAAGUGAGC   212 Target Full Sequence	2.5	PREDICTED: Zea mays auxin response factor 17 (LOC103629639), mRNA	NA	coding protein	psRNATarget