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BaseInfo

ncRNA ID	novel_zma_miR4827
Species	Zea mays
Class	miRNA
Genome position	Chr5:21838566-21838616 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	28 - GAUUAAUCAUGAUUAGUCGGACGA - 51
Stem-loop(if miRNA)	--        A          GA GA   GAUUAAUC UGAUUAGUCG  C  C   |||||||| ||||||||||  |   CUAAUUAG ACUAAUUAGC  G  U GG        C          -G AU
Stem-loop sequence	GAUUAAUCAUGAUUAGUCGGACGACUUAGGCGAUUAAUCACGAUUAAUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165773.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |||||=|||||||||||||||||| targets:948   UCGUCUGACUAAUCAUGAUUAAUC   971 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304334 (LOC100304334), mRNA	NA	coding protein	psRNATarget
BT060872.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |||||=|||||||||||||||||| targets:948   UCGUCUGACUAAUCAUGAUUAAUC   971 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0064D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677323.2	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||||||||||||||=||||||||| targets:1808   UCGUCCGACUAAUCGUGAUUAAUC   1831 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103651643 (LOC103651643), mRNA	NA	coding protein	psRNATarget
EU943325.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||||||||||||||=||||||||= targets:746   UCGUCCGACUAAUCGUGAUUAAUU   769 Target Full Sequence	2.5	Zea mays clone 1599709 mRNA sequence	NA	coding protein	psRNATarget
XM_020539214.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||||||||||||||=||||||||= targets:1783   UCGUCCGACUAAUCGUGAUUAAUU   1806 Target Full Sequence	2.5	PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539213.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||||||||||||||=||||||||= targets:1783   UCGUCCGACUAAUCGUGAUUAAUU   1806 Target Full Sequence	2.5	PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539212.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||||||||||||||=||||||||= targets:1783   UCGUCCGACUAAUCGUGAUUAAUU   1806 Target Full Sequence	2.5	PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539497.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   ||*|||||||||||=||||||||| targets:1038   UCCUCCGACUAAUCGUGAUUAAUC   1061 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276587 (LOC100276587), mRNA	NA	coding protein	psRNATarget
XM_008662044.2	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   **|*||*|||||||=||||||||| targets:6993   CAGCCCAACUAAUCGUGAUUAAUC   7016 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546483.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   **|*||*|||||||=||||||||| targets:6993   CAGCCCAACUAAUCGUGAUUAAUC   7016 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY112204.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |=||*|||=||||||||||||||| targets:60   UUGUACGAUUAAUCAUGAUUAAUC   83 Target Full Sequence	1.0	Zea mays CL21771_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020546762.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |=||||||=||||||*|||||||| targets:2349   UUGUCCGAUUAAUCACGAUUAAUC   2372 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine protein phosphatase 2A regulatory subunit B''beta (LOC103643458), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955387.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   **|*||||||||||||||*||||| targets:1868   CAGCCCGACUAAUCAUGACUAAUC   1891 Target Full Sequence	1.5	Zea mays clone 1530562 mRNA sequence	NA	coding protein	psRNATarget
EU952643.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |||--|||=||||||*|||||||| targets:895   UCG--CGAUUAAUCACGAUUAAUC   916 Target Full Sequence	2.5	Zea mays clone 1285216 mRNA sequence	NA	coding protein	psRNATarget
XM_020548725.1	ncRNA:24   AGCAGGCUGAUUAGUACUAAUUAG   1   |****||||||||||||||||||* targets:1557   UACAACGACUAAUCAUGAUUAAUG   1580 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939353 (LOC109939353), mRNA	NA	coding protein	psRNATarget