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BaseInfo

ncRNA ID	novel_zma_miR4825
Species	Zea mays
Class	miRNA
Genome position	Chr5:33976908-33977111 [+]
Reference genome	RefGen_v4
Source	SRR2287163;SRR2089700;SRR2089702;SRR2089703
Length	21
Mature sequence(if miRNA)	184 - UCAACGGUGUCAUAUAUUUAA - 204
Stem-loop(if miRNA)	--           GU             --             AUC        --AAAA      GAAUUAAUAUUUAUUUUGUUAUGGUUUGUUUUAUCAUU   AAAUAUAUGAC  CGUUGACUUUUUU  AAAACUUUGACUA   GUCUUAUU      AAAUGU                                      U   |||||||||||  |||||||||||||  |||||||||||||   ||||||||      ||||||   UUUAUAUACUG  GCAACUGAAAAAA  UUUUGAAACUGGU   CAGAAUAA      UAAAUA                                      A AA           UG             AC             GAA        GUUUUA      AGUUUUUAUAUUUCAAAGUUCAGUAUGAGUUUGUUGGA
Stem-loop sequence	AAAUAUAUGACGUCGUUGACUUUUUUAAAACUUUGACUAAUCGUCUUAUUAAAAAAAUGUGAAUUAAUAUUUAUUUUGUUAUGGUUUGUUUUAUCAUUUAAGGUUGUUUGAGUAUGACUUGAAACUUUAUAUUUUUGAAUAAAUAUUUUGAAUAAGACAAGUGGUCAAAGUUUUCAAAAAAAGUCAACGGUGUCAUAUAUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235534.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   ||||||||||||||||||||| targets:11   UUAAAUAUAUGACACCGUUGA   31 Target Full Sequence	0.0	Sequence 1529 from Patent EP2985353	NA	coding protein	psRNATarget
JB163865.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   ||||||||||||||||||||| targets:11   UUAAAUAUAUGACACCGUUGA   31 Target Full Sequence	0.0	Sequence 1529 from Patent EP2559767	NA	coding protein	psRNATarget
HI403404.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   ||||||||||||||||||||| targets:11   UUAAAUAUAUGACACCGUUGA   31 Target Full Sequence	0.0	Sequence 1529 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008675384.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||||||||| targets:1216   GUAAAUAUAUGACACCGUUGA   1236 Target Full Sequence	0.0	PREDICTED: Zea mays plant cysteine oxidase 1 (LOC103649652), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675383.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||||||||| targets:1215   GUAAAUAUAUGACACCGUUGA   1235 Target Full Sequence	0.0	PREDICTED: Zea mays plant cysteine oxidase 1 (LOC103649652), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008673697.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||=|||||| targets:2094   AUAAAUAUAUGACAUCGUUGA   2114 Target Full Sequence	1.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103649427), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547091.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||=|||||| targets:2007   AUAAAUAUAUGACAUCGUUGA   2027 Target Full Sequence	1.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103649427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001159218.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   |||||||||||||||*||||| targets:601   UUAAAUAUAUGACACAGUUGA   621 Target Full Sequence	1.5	Zea mays senescence-associated protein DIN1 (LOC100286331), mRNA	NA	coding protein	psRNATarget
EU976875.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   |||||||||||||||*||||| targets:601   UUAAAUAUAUGACACAGUUGA   621 Target Full Sequence	1.5	Zea mays clone 992519 senescence-associated protein DIN1 mRNA, complete cds	NA	coding protein	psRNATarget
EU970524.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   |||||||||||||||*||||| targets:566   UUAAAUAUAUGACACAGUUGA   586 Target Full Sequence	1.5	Zea mays clone 346886 senescence-associated protein DIN1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680325.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *||||||||||*||||||||| targets:3140   AUAAAUAUAUGUCACCGUUGA   3160 Target Full Sequence	1.5	PREDICTED: Zea mays ABC transporter A family member 7-like (LOC103653413), mRNA	NA	coding protein	psRNATarget
XM_008653624.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *||||||||||||||||||*| targets:1796   AUAAAUAUAUGACACCGUUAA   1816 Target Full Sequence	1.5	PREDICTED: Zea mays histone acetyltransferase 1 (hat1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||||*|||| targets:470   AUAAAUAUAUGACACCAUUGA   490 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669441.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *|||||||||||||||*|||| targets:1169   AUAAAUAUAUGACACCAUUGA   1189 Target Full Sequence	1.5	PREDICTED: Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017322.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *||||||*||||||=|||||| targets:613   AUAAAUAAAUGACAUCGUUGA   633 Target Full Sequence	2.5	Zea mays clone EL01N0319E06.c mRNA sequence	NA	coding protein	psRNATarget
EU965236.1	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *||||||*||||||*|||||| targets:1490   AUAAAUAAAUGACAACGUUGA   1510 Target Full Sequence	2.5	Zea mays clone 284686 mRNA mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156490.2	ncRNA:21   AAUUUAUAUACUGUGGCAACU   1   *||||||*||||||*|||||| targets:1489   AUAAAUAAAUGACAACGUUGA   1509 Target Full Sequence	2.5	Zea mays mRNA (LOC100283589), mRNA	NA	coding protein	psRNATarget