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BaseInfo

ncRNA ID novel_zma_miR4822
Species Zea mays
Class miRNA
Genome position Chr5:60200822-60200901 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 1 - GUUCUGUUGGUUUGGCAUUGCCUU - 24
Stem-loop(if miRNA) --     GAA             -ACAC    -GA     A
  GGCAA   UAGGCCAGCAGAA     CAUU   AUAUC U
  |||||   |||||||||||||     ||||   |||||
  CCGUU   GUUUGGUUGUCUU     GUGA   UAUAG U
UU     ACG             GAAUC    AGA     A
Stem-loop sequence GGCAAGAAUAGGCCAGCAGAAACACCAUUGAAUAUCAUUAGAUAUAGAAGUGCUAAGUUCUGUUGGUUUGGCAUUGCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008670249.2
ncRNA:24   UUCCGUUACGGUUUGGUUGUCUUG   1
  |||*=|=|||||||||=|||||||
targets:129   AAGCUAGUGCCAAACCGACAGAAC   152

2.5 PREDICTED: Zea mays Putative polyol transporter 1 (LOC100274325), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548303.1
ncRNA:24   UUCCGUUACGGUUUGGUUGUCUUG   1
  |||*=|=|||||||||=|||||||
targets:135   AAGCUAGUGCCAAACCGACAGAAC   158

2.5 PREDICTED: Zea mays Putative polyol transporter 1 (LOC100274325), transcript variant X2, mRNA NA coding protein psRNATarget