Search result

BaseInfo

ncRNA ID	novel_zma_miR4821
Species	Zea mays
Class	miRNA
Genome position	Chr10:129064648-129064805 [-]
Reference genome	RefGen_v4
Source	SRR2287163
Length	24
Mature sequence(if miRNA)	135 - AUAAGUUGAAUUAUGGUGGAAGGG - 158
Stem-loop(if miRNA)	--               G          AUAG                AG     C   UAAG  -A          GCA   AUAAGUUGAAUUAUG UGGAAGGGUA    GGUAAAAUAUUACUUU  AACCA AAA    GU  AAAUAAGCUA   U   ||||||||||||||| ||||||||||    ||||||||||||||||  ||||| |||    ||  ||||||||||   UAUUCAACUUAAUAC AUUUUCCCAU    CCAUUUUAUAGUGAAA  UUGGU UUU    CA  UUUAUUCGAU   U UA               G          CCUA                CU     A   -UUA  GC          AGA
Stem-loop sequence	AUAAGUUGAAUUAUGGUGGAAGGGUAAUAGGGUAAAAUAUUACUUUAGAACCACAAAUAAGGUAAAAUAAGCUAGCAUUAGAUAGCUUAUUUCGACAUUUUUAUGGUUUCAAAGUGAUAUUUUACCAUCCUACCCUUUUAGCAUAAUUCAACUUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061365.2	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   ||||||||=||||||||||=|||| targets:1167   CCCUUCCAUCAUAAUUCAAUUUAU   1190 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0139I13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001319711.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   *=|||=|||||||||||||||||| targets:2442   AUCUUUCACCAUAAUUCAACUUAU   2465 Target Full Sequence	1.0	Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA	NA	coding protein	psRNATarget
EU956753.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   *=|||=|||||||||||||||||| targets:2442   AUCUUUCACCAUAAUUCAACUUAU   2465 Target Full Sequence	1.0	Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds	NA	coding protein	psRNATarget
EU975471.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   |=|||=|||||||||*|||||||| targets:806   CUCUUUCACCAUAAUCCAACUUAU   829 Target Full Sequence	2.5	Zea mays clone 490696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036602.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   |||||*|||||||||*|||||||| targets:1073   CCCUUACACCAUAAUCCAACUUAU   1096 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   |||||*|||||||||*|||||||| targets:1073   CCCUUACACCAUAAUCCAACUUAU   1096 Target Full Sequence	2.5	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
EZ053303.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   |=||||=|*=|||||||||||||| targets:64   CUCUUCUAGUAUAAUUCAACUUAU   87 Target Full Sequence	3.0	TSA: Zea mays contig54425, mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   *|=||=||*||||||||||||||| targets:1363   ACUUUUCAGCAUAAUUCAACUUAU   1386 Target Full Sequence	2.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   GGGAAGGUGGUAUUAAGUUGAAUA   1   *|=||=||*||||||||||||||| targets:1369   ACUUUUCAGCAUAAUUCAACUUAU   1392 Target Full Sequence	2.0	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget