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BaseInfo

ncRNA ID novel_zma_miR4820
Species Zea mays
Class miRNA
Genome position Chr5:81012371-81012481 [-]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 1 - GGUUGCUGCGUGUGGAAGAGGCUA - 24
Stem-loop(if miRNA) --  G     G   - A          GACC   UGCUGGCGCCACGCACUCAAAG
  GC UUCUU UGC C CGGCGACCUC    UCC                      U
  || ||||| ||| | ||||||||||    |||                      G
  CG GAGAA GUG G GUCGUUGGGG    AUC                      A
AU  -     G   U C          AGAA   GUGUGGUACAGGGAUGCGAACC
Stem-loop sequence GCGUUCUUGUGCCACGGCGACCUCGACCUCCUGCUGGCGCCACGCACUCAAAGUGACCAAGCGUAGGGACAUGGUGUGCUAAAGAGGGGUUGCUGCGUGUGGAAGAGGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654484.2
ncRNA:24   AUCGGAGAAGGUGUGCGUCGUUGG   1
  ||||||||||||||||||||=|||
targets:3827   UAGCCUCUUCCACACGCAGCGACC   3850

1.5 PREDICTED: Zea mays uncharacterized LOC103632744 (LOC103632744), mRNA NA coding protein psRNATarget
XM_020541156.1
ncRNA:24   AUCGGAGAAGGUGUGCGUCGUUGG   1
  |*|*|||||*=||||||||||||=
targets:1318   UCGGCUCUUAUACACGCAGCAACU   1341

3.0 PREDICTED: Zea mays NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic-like (LOC109940833), mRNA NA coding protein psRNATarget