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BaseInfo

ncRNA ID novel_zma_miR4810
Species Zea mays
Class miRNA
Genome position Chr5:17808834-17808924 [+]
Reference genome RefGen_v4
Source SRR2287163;SRR2287165
Length 21
Mature sequence(if miRNA) 1 - UGGCUUUUCUAGAUACAUGGC - 21
Stem-loop(if miRNA) --    U        UA     CU         C      A    
  UGGC UUUCUAGA  CAUGG  UUUGUUGUG AUCUAG UAUAC
  |||| ||||||||  |||||  ||||||||| |||||| ||||A
  ACCG AAAGAUCU  GUAUC  AAAUGAUAC UAGAUC GUAUC
AA    C        UA     AC         A      A    
Stem-loop sequence UGGCUUUUCUAGAUACAUGGCUUUUGUUGUGCAUCUAGAUAUACACUAUGACUAGAUACAUAGUAAACACUAUGAUUCUAGAAACGCCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548465.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  ||=|||||||||||||||=||
targets:2484   GCUAUGUAUCUAGAAAAGUCA   2504

2.5 PREDICTED: Zea mays histone-lysine N-methyltransferase family member SUVH2 (LOC103647308), transcript variant X3, mRNA NA coding protein psRNATarget
BT017431.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  |===|||||||||||||||||
targets:728   GUUGUGUAUCUAGAAAAGCCA   748

2.0 Zea mays clone EL01N0403D07.c mRNA sequence NA coding protein psRNATarget
BT039099.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|=|||||||||||||||=||
targets:944   ACUAUGUAUCUAGAAAAGUCA   964

2.5 Zea mays full-length cDNA clone ZM_BFb0370L15 mRNA, complete cds NA coding protein psRNATarget
BT086732.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  ||*|||||||||||||||=||
targets:7   GCAAUGUAUCUAGAAAAGUCA   27

2.5 Zea mays full-length cDNA clone ZM_BFb0242L12 mRNA, complete cds NA coding protein psRNATarget
BT042146.2
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  |=*||||||||||||||||||
targets:239   GUGAUGUAUCUAGAAAAGCCA   259

1.0 Zea mays full-length cDNA clone ZM_BFb0146F01 mRNA, complete cds NA coding protein psRNATarget
EU940967.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  ||*||||||=|||||||||||
targets:2123   GCAAUGUAUUUAGAAAAGCCA   2143

2.5 Zea mays clone 1224444 mRNA sequence NA coding protein psRNATarget
DQ245848.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|*||||||||||||||||||
targets:715   UCAAUGUAUCUAGAAAAGCCA   735

1.0 Zea mays clone 20845 mRNA sequence NA coding protein psRNATarget
BT066991.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  |==|||||||*||||||||||
targets:666   GUUAUGUAUCCAGAAAAGCCA   686

2.5 Zea mays full-length cDNA clone ZM_BFb0138L04 mRNA, complete cds NA coding protein psRNATarget
EU956616.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  **=|||||||||||||||=||
targets:1907   UAUAUGUAUCUAGAAAAGUCA   1927

2.5 Zea mays clone 1568188 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU956616.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  **=||||||||||||||||=|
targets:1991   UAUAUGUAUCUAGAAAAGCUA   2011

2.5 Zea mays clone 1568188 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149598.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  **=|||||||||||||||=||
targets:1907   UAUAUGUAUCUAGAAAAGUCA   1927

2.5 Zea mays hypothetical protein (cl2814_1a), mRNA NA coding protein psRNATarget
NM_001149598.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  **=||||||||||||||||=|
targets:1991   UAUAUGUAUCUAGAAAAGCUA   2011

2.5 Zea mays hypothetical protein (cl2814_1a), mRNA NA coding protein psRNATarget
XM_020542673.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|*|||||||||||=||||||
targets:338   UCGAUGUAUCUAGAGAAGCCA   358

2.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM50-like (LOC103635196), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656073.2
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|*|||||||||||=||||||
targets:1335   UCGAUGUAUCUAGAGAAGCCA   1355

2.5 PREDICTED: Zea mays import inner membrane translocase subunit TIM50 (LOC100192475), transcript variant X1, mRNA NA coding protein psRNATarget
BT061904.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  |**||||||||||=|||||||
targets:957   GAAAUGUAUCUAGGAAAGCCA   977

2.5 Zea mays full-length cDNA clone ZM_BFb0196J05 mRNA, complete cds NA coding protein psRNATarget
BT018862.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  **=|||*||||||||||||||
targets:1307   UGUAUGCAUCUAGAAAAGCCA   1327

2.0 Zea mays clone EL01N0559E06.d mRNA sequence NA coding protein psRNATarget
EU975533.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|*||*|||||||||||||||
targets:1326   ACAAUAUAUCUAGAAAAGCCA   1346

2.0 Zea mays clone 491846 EMB1374 mRNA, complete cds NA coding protein psRNATarget
NM_001158974.1
ncRNA:21   CGGUACAUAGAUCUUUUCGGU   1
  *|*||*|||||||||||||||
targets:1326   ACAAUAUAUCUAGAAAAGCCA   1346

2.0 Zea mays EMB1374 isoform 1 (TIDP3564), mRNA NA coding protein psRNATarget
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