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BaseInfo

ncRNA ID	novel_zma_miR4809
Species	Zea mays
Class	miRNA
Genome position	Chr3:59528645-59528752 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883
Length	24
Mature sequence(if miRNA)	1 - AUUCCCUCCGGUUUUGUGGCUCCC - 24
Stem-loop(if miRNA)	--          C      A                         C   C   A   GAGCUAUAAA CCGGAG GGAUUGGAGGGGCUAAAUUCCCUUU UUA UUA U   |||||||||| |||||| ||||||||||||||||||||||||| ||| |||   CUCGGUGUUU GGCCUC CUUAAUCUCCCCGAUUUAAGGGGAA AAU AGU U CC          U      C                         C   A   U
Stem-loop sequence	GAGCUAUAAACCCGGAGAGGAUUGGAGGGGCUAAAUUCCCUUUCUUACUUAAUUUUGAAUAACAAGGGGAAUUUAGCCCCUCUAAUUCCCUCCGGUUUUGUGGCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
X70154.1	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |*||||=|||||||||||||||*| targets:195   GAGAGCUACAAAACCGGAGGGAUU   218 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152)	NA	coding protein	psRNATarget
X54212.1	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |*||||=|||||||||||||||*| targets:1017   GAGAGCUACAAAACCGGAGGGAUU   1040 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120)	NA	coding protein	psRNATarget
NM_001111958.1	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |*||||=|||||||||||||||*| targets:1017   GAGAGCUACAAAACCGGAGGGAUU   1040 Target Full Sequence	2.5	Zea mays protein b-32 (O6), mRNA	NA	coding protein	psRNATarget
BT040940.1	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |**=|||||=|||||||||||=|| targets:989   GACGGCCACGAAACCGGAGGGGAU   1012 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0154E21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147806.1	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |**=|||||=|||||||||||=|| targets:989   GACGGCCACGAAACCGGAGGGGAU   1012 Target Full Sequence	2.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100273367), mRNA	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:22   CUCGGUGUUUUGGCCUCCCUUA   1   |||*|||||||||*|||||||| targets:1   GAGACACAAAACCAGAGGGAAU   22 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:22   CUCGGUGUUUUGGCCUCCCUUA   1   |||*|||||||||*|||||||| targets:1   GAGACACAAAACCAGAGGGAAU   22 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:22   CUCGGUGUUUUGGCCUCCCUUA   1   |||*|||||||||*|||||||| targets:1   GAGACACAAAACCAGAGGGAAU   22 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |*||||||*||||||*|||||||| targets:805   GUGAGCCAGAAAACCAGAGGGAAU   828 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   CCCUCGGUGUUUUGGCCUCCCUUA   1   |*||||||*||||||*|||||||| targets:805   GUGAGCCAGAAAACCAGAGGGAAU   828 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget