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BaseInfo

ncRNA ID novel_zma_miR4806
Species Zea mays
Class miRNA
Genome position Chr5:168260429-168260508 [+]
Reference genome RefGen_v4
Source SRR2287163
Length 24
Mature sequence(if miRNA) 1 - AUACUCCAUUCGUUUCGUUUUAGU - 24
Stem-loop(if miRNA) --       A        G       UAUUGCUG      GUAA
  AUACUCC UUCGUUUC UUUUAGU        GAUAGU    A
  ||||||| |||||||| |||||||        ||||||
  UAUGAGG AGGCAAAG AAAAUCA        CUAUCA    A
AC       G        A       --------      AAUU
Stem-loop sequence AUACUCCAUUCGUUUCGUUUUAGUUAUUGCUGGAUAGUGUAAAAUUAAACUAUCACUAAAAAGAAACGGAGGGAGUAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001158152.1
ncRNA:24   UGAUUUUGCUUUGCUUACCUCAUA   1
  |||||||*||||||=|||||||||
targets:2174   ACUAAAAAGAAACGGAUGGAGUAU   2197

2.5 Zea mays cyclin-like F-box (LOC100285258), mRNA NA coding protein psRNATarget
EU971439.1
ncRNA:24   UGAUUUUGCUUUGCUUACCUCAUA   1
  |||||||*||||||=|||||||||
targets:2174   ACUAAAAAGAAACGGAUGGAGUAU   2197

2.5 Zea mays clone 364738 cyclin-like F-box mRNA, complete cds NA coding protein psRNATarget
EU944684.1
ncRNA:24   UGAUUUUGCUUUGCUUACCUCAUA   1
  ||||||||||||||||*||||||*
targets:762   ACUAAAACGAAACGAAGGGAGUAA   785

2.5 Zea mays clone 226132 mRNA sequence NA coding protein psRNATarget
XM_008675381.2
ncRNA:24   UGAUUUUGCUUUGCUUACCUCAUA   1
  |*|||||*||||||||*|||||||
targets:1276   AAUAAAAAGAAACGAAGGGAGUAU   1299

2.5 PREDICTED: Zea mays probable WRKY transcription factor 48 (LOC103649650), mRNA NA coding protein psRNATarget
BT016219.1
ncRNA:24   UGA---UUUUGCUUUGCUUACCUCAUA   1
  =||---|||||*|||||||*|||||||
targets:633   GCUUCAAAAACAAAACGAAGGGAGUAU   659

2.5 Zea mays clone Contig52 mRNA sequence NA coding protein psRNATarget
EU946738.1
ncRNA:24   UGA---UUUUGCUUUGCUUACCUCAUA   1
  =||---|||||*|||||||*|||||||
targets:558   GCUUCAAAAACAAAACGAAGGGAGUAU   584

2.5 Zea mays clone 323218 mRNA sequence NA coding protein psRNATarget
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