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BaseInfo

ncRNA ID	novel_zma_miR4804
Species	Zea mays
Class	miRNA
Genome position	Chr3:3177378-3177501 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	25
Mature sequence(if miRNA)	100 - CUAGAUUGGUGUAACCGAACAUGCC - 124
Stem-loop(if miRNA)	--CU                 UC      G           U  A    A  GU     CAU     UGUUCGGUUACACCAAU  AGAGGG GAUUGGAGGGG UU AAUC CC  CUAGU   U     |||||||||||||||||  |||||| ||||||||||| || |||| ||  |||||     ACAAGCCAAUGUGGUUA  UCUCUC CUAACUUCCCC AA UUAG GG  GAUCA   U CCGU                 GA      A           U  A    G  AG     AUU
Stem-loop sequence	CUUGUUCGGUUACACCAAUUCAGAGGGGGAUUGGAGGGGUUUAAAUCACCGUCUAGUCAUUUUUAACUAGGAGGGGAUUAAAUCCCCUUCAAUCACUCUCUAGAUUGGUGUAACCGAACAUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   |||*||||||||||||||||||*|| targets:37   GGCUUGUUCGGUUACACCAAUCCAG   61 Target Full Sequence	1.5	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   |||*||||||||||||||||||*|| targets:1268   GGCUUGUUCGGUUACACCAAUCCAG   1292 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655395.2	ncRNA:25   CCGUA-CAAGCCAAUGUGGUUAGAUC   1   |||*|-|||||*|||||||||||||| targets:484   GGCCUUGUUCGUUUACACCAAUCUAG   509 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103633684 (LOC103633684), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   **||*|||||||||||||||||*|| targets:1487   UUCACGUUCGGUUACACCAAUCCAG   1511 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
BT042688.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   **||*|||||||||||||||||*|| targets:1588   UUCACGUUCGGUUACACCAAUCCAG   1612 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   **||*|||||||||||||||||*|| targets:1588   UUCACGUUCGGUUACACCAAUCCAG   1612 Target Full Sequence	1.5	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
EU971133.1	ncRNA:25   CCGUACAAGCCAAUGUGGUUAGAUC   1   **||*|||||||||||||||||*|| targets:1484   UUCACGUUCGGUUACACCAAUCCAG   1508 Target Full Sequence	1.5	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   CGUACAAGCCAAUGUGGUUAGAUC   1   ||*||||||*|||||||||||*|| targets:1   GCUUGUUCGUUUACACCAAUCCAG   24 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   CGUACAAGCCAAUGUGGUUAGAUC   1   ||*||||||*|||||||||||*|| targets:1   GCUUGUUCGUUUACACCAAUCCAG   24 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   CGUACAAGCCAAUGUGGUUAGAUC   1   ||*||||||*|||||||||||*|| targets:1   GCUUGUUCGUUUACACCAAUCCAG   24 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
EZ064120.1	ncRNA:25   CCGUA-CAAGCCAAUGUGGUUAGAUC   1   |||*|-|||||*|||||||||||*|| targets:87   GGCUUUGUUCGUUUACACCAAUCCAG   112 Target Full Sequence	2.5	TSA: Zea mays contig65243, mRNA sequence	NA	coding protein	psRNATarget
XM_008673886.2	ncRNA:25   CCGUA-CAAGCCAAUGUGGUUAGAUC   1   |||*|-|||||*|||||||||||*|| targets:2369   GGCUUUGUUCGUUUACACCAAUCCAG   2394 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193045 (LOC100193045), transcript variant X1, mRNA	NA	coding protein	psRNATarget