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BaseInfo

ncRNA ID novel_zma_miR4796
Species Zea mays
Class miRNA
Genome position Chr10:80007308-80007446 [+]
Reference genome RefGen_v4
Source SRR2287163
Length 21
Mature sequence(if miRNA) 1 - UCCCUCCGUCCCAAAAUAAAA - 21
Stem-loop(if miRNA) --    U    C C      AAAU  A     C     U    GAU     UAUAUAU   ACUAUAUUCA
  UCCC CCGU C AAAAUA    UC UUUUA CUUUU AUUU   UGUUU       GUG          U
  |||| |||| | ||||||    || ||||| ||||| ||||   |||||       |||
  AGGG GGCA G UUUUAU    AG AAAAU GAGAA UAAA   ACAGA       AGU          C
UG    U    A A      CAUC  C     C     C    AAU     ---UGCA   UUACUUACUA
Stem-loop sequence UCCCUCCGUCCCAAAAUAAAAUUCAUUUUACCUUUUUAUUUGAUUGUUUUAUAUAUGUGACUAUAUUCAUCAUCAUUCAUUUGAACGUAGACAUAAAAAUCAAGAGCUAAAACGACUACUAUUUUAGAACGGUGGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT067948.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||||||||||=|||||||
targets:1800   UUUUAUUUUGGGAUGGAGGGA   1820

1.5 Zea mays full-length cDNA clone ZM_BFb0011B23 mRNA, complete cds NA coding protein psRNATarget
NM_001176292.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||||||||||=|||||||
targets:1800   UUUUAUUUUGGGAUGGAGGGA   1820

1.5 Zea mays uncharacterized LOC100383647 (LOC100383647), mRNA NA coding protein psRNATarget
EZ068170.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||||||*|||||||||||
targets:61   UUUUAUUUUAGGACGGAGGGA   81

1.5 TSA: Zea mays contig03805, mRNA sequence NA coding protein psRNATarget
XM_020550135.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*|||||||||||||||
targets:1704   UUUUAAUUUGGGACGGAGGGA   1724

1.0 PREDICTED: Zea mays phospholipid-transporting ATPase 2-like (LOC103649838), transcript variant X1, mRNA NA coding protein psRNATarget
EU974312.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  ***||||||||||||||||||
targets:689   AACUAUUUUGGGACGGAGGGA   709

1.0 Zea mays clone 445834 mRNA sequence NA coding protein psRNATarget
XM_008665223.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|=||||||||||||||||
targets:3229   AUAUGUUUUGGGACGGAGGGA   3249

2.0 PREDICTED: Zea mays uncharacterized LOC103641914 (LOC103641914), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008665222.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|=||||||||||||||||
targets:3376   AUAUGUUUUGGGACGGAGGGA   3396

2.0 PREDICTED: Zea mays uncharacterized LOC103641914 (LOC103641914), transcript variant X1, mRNA NA coding protein psRNATarget
EU974289.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  ||*||||*|||||||||||||
targets:345   UUAUAUUCUGGGACGGAGGGA   365

2.0 Zea mays clone 445101 mRNA sequence NA coding protein psRNATarget
XM_020547740.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  ||*|||||||||||||||*||
targets:1413   UUAUAUUUUGGGACGGAGUGA   1433

2.5 PREDICTED: Zea mays uncharacterized LOC100282919 (cl5026_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658304.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*|||*|||||||||||
targets:3236   UUUUAAUUUUGGACGGAGGGA   3256

2.5 PREDICTED: Zea mays 2-isopropylmalate synthase A (LOC103635930), mRNA NA coding protein psRNATarget
XM_008683379.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020537610.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008671177.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  ||*||||||||*|||||||||
targets:4833   UUAUAUUUUGGUACGGAGGGA   4853

2.5 PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC103646444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008683385.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008683384.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008683387.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008683371.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008683366.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008683354.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008683360.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020537605.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550009.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||||*||||
targets:4232   UUUUAAUUUGGGACGGUGGGA   4252

2.5 PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537592.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||*||||||
targets:236   UUUUAAUUUGGGACAGAGGGA   256

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008675272.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |||||*||||||||||*||||
targets:4351   UUUUAAUUUGGGACGGUGGGA   4371

2.5 PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546090.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  ||*||||||||||||||*|||
targets:3174   UUAUAUUUUGGGACGGAAGGA   3194

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103641631), mRNA NA coding protein psRNATarget
EU968937.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  **||||||||||||||||*||
targets:1609   ACUUAUUUUGGGACGGAGAGA   1629

1.5 Zea mays clone 325094 bZIP transcription factor ABI5 mRNA, complete cds NA coding protein psRNATarget
NM_001157477.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  **||||||||||||||||*||
targets:1609   ACUUAUUUUGGGACGGAGAGA   1629

1.5 Zea mays bZIP transcription factor ABI5 (LOC100284582), mRNA NA coding protein psRNATarget
XM_020547355.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *||||||*|||||||||*|||
targets:1099   GUUUAUUAUGGGACGGAUGGA   1119

2.5 PREDICTED: Zea mays hypothetical protein (LOC100191815), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668837.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *||||||*|||||||||*|||
targets:1108   GUUUAUUAUGGGACGGAUGGA   1128

2.5 PREDICTED: Zea mays hypothetical protein (LOC100191815), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547354.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *||||||*|||||||||*|||
targets:1177   GUUUAUUAUGGGACGGAUGGA   1197

2.5 PREDICTED: Zea mays hypothetical protein (LOC100191815), transcript variant X1, mRNA NA coding protein psRNATarget
EU967579.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*||||||||||||||||*|
targets:1597   CUAUAUUUUGGGACGGAGGAA   1617

2.5 Zea mays clone 304590 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150870.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*||||||||||||||||*|
targets:1597   CUAUAUUUUGGGACGGAGGAA   1617

2.5 Zea mays uncharacterized LOC100277245 (LOC100277245), mRNA NA coding protein psRNATarget
XM_020543536.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|||||||||||||||*||
targets:2408   CUAUAUUUUGGGACGGAGAGA   2428

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|||||||||||||||*||
targets:2408   CUAUAUUUUGGGACGGAGAGA   2428

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549631.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*||||||||||||||||*|
targets:3963   CUAUAUUUUGGGACGGAGGAA   3983

2.5 PREDICTED: Zea mays uncharacterized LOC100277245 (LOC100277245), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|||||||||||||||*||
targets:2536   CUAUAUUUUGGGACGGAGAGA   2556

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  *|*|||||||||||||||*||
targets:2543   CUAUAUUUUGGGACGGAGAGA   2563

2.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
BT084952.2
ncRNA:21   AAAAUAAAACCCUGCCUCCCU   1
  |**|||*||||||||||||||
targets:33   UACUAUGUUGGGACGGAGGGA   53

2.0 Zea mays full-length cDNA clone ZM_BFb0213O06 mRNA, complete cds NA coding protein psRNATarget
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