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BaseInfo

ncRNA ID novel_zma_miR4782
Species Zea mays
Class miRNA
Genome position Chr3:209426462-209426559 [-]
Reference genome RefGen_v4
Source SRR2287162;SRR5451003
Length 24
Mature sequence(if miRNA) 75 - AAUUCAUAUGGAUUGGAGGGGAUU - 98
Stem-loop(if miRNA) --               GA         UACGGAUU     ---G      GAC
  AAUUCAUAUGGAUUG  GGGGAUUGA        GGAGG    GAUUUU   U
  |||||||||||||||  |||||||||        |||||    ||||||   U
  UUAGGUAUACCUAAC  CCCCUAACU        CCUCC    UUAGGG   A
GG               UC         --------     AAAA      AUC
Stem-loop sequence AAUUCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUAAAACCUCCUCAAUCCCCCUCAAUCCAUAUGGAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658561.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:303   AAUCCCCUCCAAUCCAUAUGGAUU   326

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:1632   AAUCCCCUCCAAUCCAUAUGGAUU   1655

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:24   AAUCCCCUCCAAUCCAUAUGGAUU   47

1.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:1200   AAUCCCCUCCAAUCCAUAUGGAUU   1223

1.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||=|||||||||=|||
targets:1087   AAUCCCCUCCGAUCCAUAUGGAUU   1110

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:1162   AAUCCCCUCCAAUCCAUAUGGAUU   1185

1.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||=|||||||||=|||
targets:1049   AAUCCCCUCCGAUCCAUAUGGAUU   1072

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:919   AAUCCCCUCCAAUCCAUAUGGAUU   942

1.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:847   AAUCCCCUCCAAUCCAUAUGGAUU   870

1.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869

1.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869

1.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:848   AAUCCCCUCCAAUCCAUAUGGAUU   871

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:900   AAUCCCCUCCAAUCCAUAUGGAUU   923

1.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:701   AAUCCCCUCCAAUCCAUAUGGAUU   724

1.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  |||||||||=||||||||||||||
targets:786   AAUCCCCUCUAAUCCAUAUGAAUU   809

1.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||||||||||||||=|||
targets:447   AAUCCCCUCCAAUCCAUAUGGAUU   470

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001

2.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT055765.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||=|||||||||||||=|||
targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346

2.5 Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds NA coding protein psRNATarget
NM_001153131.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||=|||||||||||||=|||
targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346

2.5 Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA NA coding protein psRNATarget
BT024027.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||=|||||||||||||=|||
targets:1645   AAUCCCUUCCAAUCCAUAUGGAUU   1668

2.5 Zea mays clone EL01N0420G12 mRNA sequence NA coding protein psRNATarget
BT041454.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||||=|||||||||||=|||
targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
EU953075.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|||||||||||||||=|||
targets:1010   AAUCUCCUCCAAUCCAUAUGGAUU   1033

1.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||=|||||||||||||=|||
targets:838   AAUCCCUUCCAAUCCAUAUGGAUU   861

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|||=|||||||||||=|||
targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145

2.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  =|||||||=|||||||||||=|||
targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723

2.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_020545025.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|||||||||||||||=||*
targets:337   AAUCUCCUCCAAUCCAUAUGGAUG   360

2.5 PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA NA coding protein psRNATarget
EU940858.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  =|||==||||||||=|||||||||
targets:2252   GAUCUUCUCCAAUCUAUAUGAAUU   2275

2.5 Zea mays clone 1164678 mRNA sequence NA coding protein psRNATarget
XM_008682725.2
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*||||||||||||||=||
targets:359   AAUCCCAUCCAAUCCAUAUGAGUU   382

2.5 PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA NA coding protein psRNATarget
BT018999.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||=*=|||||||||||||||
targets:466   AAUCCCUCUCAAUCCAUAUGAAUU   489

3.0 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
EZ092886.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|=||||||*||||||||||
targets:70   AAUCUCUUCCAAUACAUAUGAAUU   93

2.5 TSA: Zea mays contig28535, mRNA sequence NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:4251   AAUCCCAUCCAAUCCAUAUGUAUU   4274

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:4155   AAUCCCAUCCAAUCCAUAUGUAUU   4178

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3831   AAUCCCAUCCAAUCCAUAUGUAUU   3854

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3756   AAUCCCAUCCAAUCCAUAUGUAUU   3779

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3769   AAUCCCAUCCAAUCCAUAUGUAUU   3792

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3761   AAUCCCAUCCAAUCCAUAUGUAUU   3784

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3767   AAUCCCAUCCAAUCCAUAUGUAUU   3790

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3713   AAUCCCAUCCAAUCCAUAUGUAUU   3736

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:3689   AAUCCCAUCCAAUCCAUAUGUAUU   3712

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
JB166283.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
HI405822.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
LQ237952.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
JB166284.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
LQ237953.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405823.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||||*|||||||||||||*|||
targets:95   AAUCCCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
EU963259.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:1015   AAUCUCAUCCAAUCCAUAUGUAUU   1038

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT068211.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:772   AAUCUCAUCCAAUCCAUAUGUAUU   795

2.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:772   AAUCUCAUCCAAUCCAUAUGUAUU   795

2.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EZ070047.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:36   AAUCUCAUCCAAUCCAUAUGUAUU   59

2.5 TSA: Zea mays contig05683, mRNA sequence NA coding protein psRNATarget
LQ237962.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
JB166301.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
HI405832.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
HI405840.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
JB166293.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
LQ237970.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  ||||=|*|||||||||||||*|||
targets:95   AAUCUCAUCCAAUCCAUAUGUAUU   118

2.5 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
XM_020542631.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  |||*=|*|||||||||||||=|||
targets:6363   AAUAUCAUCCAAUCCAUAUGGAUU   6386

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542629.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  |||*=|*|||||||||||||=|||
targets:5948   AAUAUCAUCCAAUCCAUAUGGAUU   5971

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542630.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  |||*=|*|||||||||||||=|||
targets:5886   AAUAUCAUCCAAUCCAUAUGGAUU   5909

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA NA coding protein psRNATarget
BT086782.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  |=|*||*|||||||||||||=|||
targets:639   AGUGCCAUCCAAUCCAUAUGGAUU   662

2.5 Zea mays full-length cDNA clone ZM_BFb0331G03 mRNA, complete cds NA coding protein psRNATarget
EZ077523.1
ncRNA:24   UUAGGGGAGGUUAGGUAUACUUAA   1
  =||*||=|||||||||*|||||||
targets:115   GAUACCUUCCAAUCCACAUGAAUU   138

2.5 TSA: Zea mays contig13161, mRNA sequence NA coding protein psRNATarget