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BaseInfo

ncRNA ID	novel_zma_miR4780
Species	Zea mays
Class	miRNA
Genome position	Chr3:227278827-227278977 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	128 - UGUAUUGGGUGGGAUUGUGAUGGA - 151
Stem-loop(if miRNA)	--G     GU   UG  UG   ---AGA    G G   GAU    A    UG A       AA   AUUAACGA   G    GUCAU  UCU  CU  GUG      GGUG G AUG   AUGU GAUA  C AGCAAGG  UUA        UGU C    |||||  |||  ||  |||      |||| | |||   |||| ||||  | |||||||  |||        ||| A    UAGUG  AGG  GG  UAU      UUAU U UAC   UAUA UUAU  G UUGUUCC  AGU        ACG U AGG     UU   GU  GU   GUGAGG    G G   -AU    G    UG C       GG   --CCCAUG   A
Stem-loop sequence	GGUCAUGUUCUUGCUUGGUGAGAGGUGGGGAUGGAUAUGUAGAUAUGCAAGCAAGGAAUUAAUUAACGAUGUGCAUAGCAGUACCCUGAGGCCUUGUUCGGUUAUUGAUAUUACAUGUGUAUUGGAGUGUAUUGGGUGGGAUUGUGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240934.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*||||||||||||||||| targets:56   UCCACCCCAAUCCCACCCAAUACA   79 Target Full Sequence	1.0	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*||||||||||||||||| targets:56   UCCACCCCAAUCCCACCCAAUACA   79 Target Full Sequence	1.0	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*||||||||||||||||| targets:56   UCCACCCCAAUCCCACCCAAUACA   79 Target Full Sequence	1.0	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008681684.2	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   |*||||*|||||=||||||||||| targets:2873   UACAUCUCAAUCUCACCCAAUACA   2896 Target Full Sequence	2.5	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*|||||||||=||||||| targets:2346   UCCACCCCAAUCCCACUCAAUACA   2369 Target Full Sequence	2.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   |*||||*||||||||=|||||||| targets:1581   UACAUCUCAAUCCCAUCCAAUACA   1604 Target Full Sequence	2.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*|||||||||=||||||| targets:1234   UCCACCCCAAUCCCACUCAAUACA   1257 Target Full Sequence	2.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*|||||||||=||||||| targets:1234   UCCACCCCAAUCCCACUCAAUACA   1257 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   ||||*|*|||||||||=||||||| targets:136   UCCACCCCAAUCCCACUCAAUACA   159 Target Full Sequence	2.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
HI406890.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   |*||||*|||||=||||||||||| targets:89   UACAUCUCAAUCUCACCCAAUACA   112 Target Full Sequence	2.5	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   |*||||*|||||=||||||||||| targets:89   UACAUCUCAAUCUCACCCAAUACA   112 Target Full Sequence	2.5	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   AGGUAGUGUUAGGGUGGGUUAUGU   1   |*||||*|||||=||||||||||| targets:89   UACAUCUCAAUCUCACCCAAUACA   112 Target Full Sequence	2.5	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget