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BaseInfo

ncRNA ID	novel_zma_miR4778
Species	Zea mays
Class	miRNA
Genome position	Chr3:212212988-212213072 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AGAAGACACUCGGCAAAGACACUC - 24
Stem-loop(if miRNA)	--  A               A  --C     A       C   U   AG AGACACUCGGCAAAG CA   UCUUU CCGAGUG CAG U   || ||||||||||||||| ||   ||||| ||||||| |||   UC UCUGUGAGCUGUUUC GU   AGAAA GGCUUAC GUU A UU  G               -  CUA     C       A   U
Stem-loop sequence	AGAAGACACUCGGCAAAGACACUCUUUACCGAGUGCCAGUUAUUUGACAUUCGGCAAAGAAUCUGCUUUGUCGAGUGUCUGCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067215.1	ncRNA:24   CUCA--CAGAAACGGCUCACAGAAGA   1   **||--||||||||||||||||*||* targets:1358   CCGUUAGUCUUUGCCGAGUGUCAUCC   1383 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=****||||||||||||||*||| targets:1440   AGCAUACUUUGCCGAGUGUCAUCU   1463 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   CUCA--CAGAAACGGCUCACAGAAGA   1   **||--||||||||||||||||*||* targets:1495   CCGUUAGUCUUUGCCGAGUGUCAUCC   1520 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=****||||||||||||||*||| targets:1577   AGCAUACUUUGCCGAGUGUCAUCU   1600 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   CUCA--CAGAAACGGCUCACAGAAGA   1   **||--||||||||||||||||*||* targets:1495   CCGUUAGUCUUUGCCGAGUGUCAUCC   1520 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=****||||||||||||||*||| targets:1577   AGCAUACUUUGCCGAGUGUCAUCU   1600 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=**|*|||||||||||||||||| targets:55   AGAAGGCUUUGCCGAGUGUCUUCU   78 Target Full Sequence	1.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=**|*|||||||||||||||||| targets:55   AGAAGGCUUUGCCGAGUGUCUUCU   78 Target Full Sequence	1.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   CUCACAGAAACGGCUCACAGAAGA   1   *=**|*|||||||||||||||||| targets:55   AGAAGGCUUUGCCGAGUGUCUUCU   78 Target Full Sequence	1.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget