Search result

BaseInfo

ncRNA ID	novel_zma_miR4773
Species	Zea mays
Class	miRNA
Genome position	Chr3:182503863-182503979 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	94 - AAGUGGAAUAAAUUAGAGGGACUA - 117
Stem-loop(if miRNA)	--       CAU                 UA       CA              UAAC   GUCCCUC   UUUAUUCCACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA    U   |||||||   |||||||||||||||||  |||||||  ||||||||||||||    C   CAGGGAG   AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACUUUUGAU    U AU       AUU                 UG       AG              UUUA
Stem-loop sequence	GUCCCUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUUCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUAGAGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|||||||||||||| targets:1658   UAGUCCCUCCAAUUUAUUCCACUU   1681 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|||||||||||||| targets:19   UAGUCCCUCCAAUUUAUUCCACUU   42 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|||||||||||=|| targets:142   UAGUCCCUCCAAUUUAUUCCAUUU   165 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|*|||||||||||| targets:2988   UAGUCCCUCCAUUUUAUUCCACUU   3011 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|*|||||||||||| targets:2599   UAGUCCCUCCAUUUUAUUCCACUU   2622 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   |||||||||*|*|||||||||||| targets:481   UAGUCCCUCCAUUUUAUUCCACUU   504 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008662937.2	ncRNA:24   AUC-------AGGGAGAUUAAAUAAGGUGAA   1   |||-------|=|||=||||||||||||=|| targets:2465   UAGGGCCCUUUUCCUUUAAUUUAUUCCAUUU   2495 Target Full Sequence	2.5	PREDICTED: Zea mays probable galacturonosyltransferase 13 (LOC103640332), mRNA	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   ||||==*||*|||||||||||||| targets:1141   UAGUUUAUCCAAUUUAUUCCACUU   1164 Target Full Sequence	3.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
HI406793.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   ||*||||||**||||||||||||| targets:8   UAAUCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2074227	NA	coding protein	psRNATarget
JB167254.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   ||*||||||**||||||||||||| targets:8   UAAUCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238923.1	ncRNA:24   AUCAGGGAGAUUAAAUAAGGUGAA   1   ||*||||||**||||||||||||| targets:8   UAAUCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2985353	NA	coding protein	psRNATarget