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BaseInfo

ncRNA ID novel_zma_miR4766
Species Zea mays
Class miRNA
Genome position Chr2:63895122-63895322 [+]
Reference genome RefGen_v4
Source SRR2287162;SRR2287163
Length 21
Mature sequence(if miRNA) 1 - UGAUAUCACAUGUAGAGGCUG - 21
Stem-loop(if miRNA) --        C                    AA   A   U    --G       U     GA  G        G            A U   CA      CA
  UGAUAUCA AUGUAGAGGCUGUGAUAAAA  AUU GAA GUUU   GAGAAAG UGUGA  CA UAUGUGUA AAACCUAAGAGA C ACA  UGAAAU  U
  |||||||| ||||||||||||||||||||  ||| ||| ||||   ||||||| |||||  || |||||||| |||||||||||| | |||  ||||||
  ACUAUAGU UACAUCUCCGAUACUAUUUU  UAA CUU UAAA   CUCUUUC ACACU  GU AUACACAU UUUGGAUUCUCU G UGU  ACUUUG  A
GU        A                    --   A   U    AAA       U     GC  G        G            A C   -A      AG
Stem-loop sequence UGAUAUCACAUGUAGAGGCUGUGAUAAAAAAAUUAGAAUGUUUGGAGAAAGUUGUGAGACAGUAUGUGUAGAAACCUAAGAGAACUACACAUGAAAUCAUAGAGUUUCAAUGUCGAUCUCUUAGGUUUGUACACAUAGUGCGUCACAUCUUUCUCAAAAAAUUUUCAAAUUUUUAUCAUAGCCUCUACAUAUGAUAUCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ089840.1
ncRNA:21   GUCGGAGAUGUACACUAUAGU   1
  ||||||||||||*||||||||
targets:2   CAGCCUCUACAUAUGAUAUCA   22

1.5 TSA: Zea mays contig25486, mRNA sequence NA coding protein psRNATarget
HI403209.1
ncRNA:21   GUCGGAGAUGUACACUAUAGU   1
  ||||||||||||*||||||||
targets:206   CAGCCUCUACAUAUGAUAUCA   226

1.5 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
LQ235339.1
ncRNA:21   GUCGGAGAUGUACACUAUAGU   1
  ||||||||||||*||||||||
targets:206   CAGCCUCUACAUAUGAUAUCA   226

1.5 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
JB163670.1
ncRNA:21   GUCGGAGAUGUACACUAUAGU   1
  ||||||||||||*||||||||
targets:206   CAGCCUCUACAUAUGAUAUCA   226

1.5 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget