ncRNA ID | novel_zma_miR4766 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:63895122-63895322 [+] |
Reference genome | RefGen_v4 |
Source | SRR2287162;SRR2287163 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UGAUAUCACAUGUAGAGGCUG - 21 |
Stem-loop(if miRNA) |
--        C                    AA   A   U    --G       U     GA  G        G            A U   CA      CA   UGAUAUCA AUGUAGAGGCUGUGAUAAAA  AUU GAA GUUU   GAGAAAG UGUGA  CA UAUGUGUA AAACCUAAGAGA C ACA  UGAAAU  U   |||||||| ||||||||||||||||||||  ||| ||| ||||   ||||||| |||||  || |||||||| |||||||||||| | |||  ||||||   ACUAUAGU UACAUCUCCGAUACUAUUUU  UAA CUU UAAA   CUCUUUC ACACU  GU AUACACAU UUUGGAUUCUCU G UGU  ACUUUG  A GU        A                    --   A   U    AAA       U     GC  G        G            A C   -A      AG |
Stem-loop sequence | UGAUAUCACAUGUAGAGGCUGUGAUAAAAAAAUUAGAAUGUUUGGAGAAAGUUGUGAGACAGUAUGUGUAGAAACCUAAGAGAACUACACAUGAAAUCAUAGAGUUUCAAUGUCGAUCUCUUAGGUUUGUACACAUAGUGCGUCACAUCUUUCUCAAAAAAUUUUCAAAUUUUUAUCAUAGCCUCUACAUAUGAUAUCAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ089840.1 |
|
1.5 | TSA: Zea mays contig25486, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
HI403209.1 |
|
1.5 | Sequence 1334 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
LQ235339.1 |
|
1.5 | Sequence 1334 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
JB163670.1 |
|
1.5 | Sequence 1334 from Patent EP2559767 | NA | coding protein | psRNATarget |