Search result

BaseInfo

ncRNA ID novel_zma_miR4765
Species Zea mays
Class miRNA
Genome position Chr2:57533965-57534084 [+]
Reference genome RefGen_v4
Source SRR2287162
Length 21
Mature sequence(if miRNA) 100 - UGGAUGUGGAGGAUGUGGUCU - 120
Stem-loop(if miRNA) --      C                              ---    A        U UUUG
  ACCACA CCUCCACAUCCAACGGUGCUGCGUCAGGGG   UUUU UAAAAUGU C    U
  |||||| ||||||||||||||||||||||||||||||   |||| |||||||| |    A
  UGGUGU GGAGGUGUAGGUUGUCACGACGCAGUCCCC   AAAA AUUUUACA G    A
UC      A                              CCA    C        U UCUC
Stem-loop sequence ACCACACCCUCCACAUCCAACGGUGCUGCGUCAGGGGUUUUAUAAAAUGUUCUUUGUAACUCUGUACAUUUUACAAAAACCCCCCUGACGCAGCACUGUUGGAUGUGGAGGAUGUGGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650980.2
ncRNA:21   UCUGGUGUAGGAGGUGUAGGU   1
  =||||||=|||||||||||||
targets:204   GGACCACGUCCUCCACAUCCA   224

1.0 PREDICTED: Zea mays mechanosensitive ion channel protein 10 (LOC103625685), mRNA NA coding protein psRNATarget
XM_008681149.2
ncRNA:21   UCUGGUGUAGGAGGUGUAGGU   1
  ||=|||||*||||||||||||
targets:586   AGGCCACACCCUCCACAUCCA   606

2.5 PREDICTED: Zea mays mini zinc finger protein 1 (LOC103654311), mRNA NA coding protein psRNATarget
XM_020539811.1
ncRNA:21   UCUGGUGUAGGAGGUGUAGGU   1
  |*||||||*||||||||||||
targets:1544   AUACCACACCCUCCACAUCCA   1564

1.5 PREDICTED: Zea mays anthocyanidin 3-O-glucoside 6''-O-acyltransferase (LOC103631128), mRNA NA coding protein psRNATarget
XM_020548425.1
ncRNA:21   UCUGGUGUAGGAGGUGUAGGU   1
  =||||||*||||||||*||||
targets:1250   GGACCACCUCCUCCACCUCCA   1270

2.5 PREDICTED: Zea mays protein diaphanous homolog 1-like (LOC109944030), mRNA NA coding protein psRNATarget
XM_020548424.1
ncRNA:21   UCUGGUGUAGGAGGUGUAGGU   1
  =||||||*||||||||*||||
targets:1872   GGACCACCUCCUCCACCUCCA   1892

2.5 PREDICTED: Zea mays formin-like protein 5 (LOC103647127), mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.