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BaseInfo

ncRNA ID novel_zma_miR4760
Species Zea mays
Class miRNA
Genome position Chr2:38180206-38180273 [-]
Reference genome RefGen_v4
Source SRR2287162;SRR2287163
Length 24
Mature sequence(if miRNA) 1 - CUUCAUACUGUGGAAGAGGGUACC - 24
Stem-loop(if miRNA) --    A    -  ---      CCU   G  GUC   C
  UGCC CUCU CC   GUGUGA   AGA GU   GUA G
  |||| |||| ||   ||||||   ||| ||   |||
  AUGG GAGA GG   CAUACU   UCU CG   CGU G
CC    -    A  UGU      ---   G  --A   G
Stem-loop sequence UGCCACUCUCCGUGUGACCUAGAGGUGUCGUACGGGUGCAGCGUCUUCAUACUGUGGAAGAGGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ517154.1
ncRNA:24   CCAUGGGAGAAGGUGUCAUACUUC   1
  |*|=|=||||||||||||||*|||
targets:44   GCUGCUCUCUUCCACAGUAUAAAG   67

2.5 TSA: Zea mays cultivar W22 CL560Contig1.betc, mRNA sequence NA coding protein psRNATarget
EU948847.1
ncRNA:24   CCAUGGGAGAAGGUGUCAUACUUC   1
  |*|=|=||||||||||||||*|||
targets:946   GCUGCUCUCUUCCACAGUAUAAAG   969

2.5 Zea mays clone 387147 mRNA sequence NA coding protein psRNATarget
XM_008660050.2
ncRNA:24   CCAUGGGAGAAGGUGUCAUACUUC   1
  |*|=|=||||||||||||||*|||
targets:957   GCUGCUCUCUUCCACAGUAUAAAG   980

2.5 PREDICTED: Zea mays Nucleolar GTP-binding protein 1 (pco114058), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650971.2
ncRNA:24   CCAUGGGAGAAGGUGUCAUACUUC   1
  |*|=|*||||||||||||||*|||
targets:997   GCUGCACUCUUCCACAGUAUAAAG   1020

2.5 PREDICTED: Zea mays nucleolar GTP-binding protein 1 (LOC103629872), mRNA NA coding protein psRNATarget