Search result

BaseInfo

ncRNA ID	osa-miRf10073-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GAUGAGUCAUCUGUGACGGGC - NA
Stem-loop(if miRNA)	C  U    G           G     C     A   --   AUUGUCAUCUC CC UA GGCC GUCACAGAUGA UCAUC GUGAC GGU  CUG           A || || |||| ||||||||||| ||||| ||||| |||  |||           A GG AU CCGG CAGUGUCUACU AGUAG CACUG CCG  GUA           U   C  C    G           G     C     C   AG   UGAUUACGGGC
Stem-loop sequence	CCCUAUGGCCGGUCACAGAUGAGUCAUCCGUGACAGGUCUGAUUGUCAUCUCAAUCGGGCAUUAGUAUGGAGCCCGUCACCGAUGAGUCAUCUGUGACGGGCCCUACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068923.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   ||||||||||||||||||||| targets:1222   GCCCGUCACAGAUGACUCAUC   1242 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK241950.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   *|||||||||||||||||||| targets:1031   ACCCGUCACAGAUGACUCAUC   1051 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075091F02, full insert sequence	NA	coding protein	psRNATarget
HI403854.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:86   GCCCGUCACAGAUGACUUAUU   106 Target Full Sequence	2.5	Sequence 1979 from Patent EP2074227	NA	coding protein	psRNATarget
JB164315.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:86   GCCCGUCACAGAUGACUUAUU   106 Target Full Sequence	2.5	Sequence 1979 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235984.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:86   GCCCGUCACAGAUGACUUAUU   106 Target Full Sequence	2.5	Sequence 1979 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235905.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:91   GCCCGUCACAGAUGACUUAUU   111 Target Full Sequence	2.5	Sequence 1900 from Patent EP2985353	NA	coding protein	psRNATarget
HI403775.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:91   GCCCGUCACAGAUGACUUAUU   111 Target Full Sequence	2.5	Sequence 1900 from Patent EP2074227	NA	coding protein	psRNATarget
JB164236.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   |||||||||||||||||=||= targets:91   GCCCGUCACAGAUGACUUAUU   111 Target Full Sequence	2.5	Sequence 1900 from Patent EP2559767	NA	coding protein	psRNATarget
AK288241.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   *||||||||||=||||||||| targets:1521   ACCCGUCACAGGUGACUCAUC   1541 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
XM_015763577.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   *||||||||||||||*||||| targets:1456   ACCCGUCACAGAUGAGUCAUC   1476 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (LOC107279605), mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At2g25790(LOC107279605)	coding protein	psRNATarget
XM_015761270.1	ncRNA:21   CGGGCAGUGUCUACUGAGUAG   1   *|*||||||*||||||||||| targets:5   ACACGUCACUGAUGACUCAUC   25 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270068 (LOC9270068), mRNA	uncharacterized LOC9270068(LOC9270068)	coding protein	psRNATarget