Search result

BaseInfo

ncRNA ID novel_zma_miR4759
Species Zea mays
Class miRNA
Genome position Chr2:39002661-39002712 [-]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 29 - AAGAAUUGAGGAUGGCUAGAGUUA - 52
Stem-loop(if miRNA) --     UUG        U     UA
  AAGAA   AGGAUGGC AGAGU  C
  |||||   |||||||| |||||  C
  UUCUU   UUUUAUUG UCUUA  C
AU     -CG        C     CA
Stem-loop sequence AAGAAUUGAGGAUGGCUAGAGUUACCCACAUUCUCGUUAUUUUGCUUCUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ104601.1
ncRNA:24   AUUGAGAUCGGUAGGAGUUAAGAA   1
  ||||*||||||||*||||||||||
targets:44   UAACACUAGCCAUACUCAAUUCUU   67

1.5 TSA: Zea mays contig40258, mRNA sequence NA coding protein psRNATarget
XM_008648017.2
ncRNA:24   AUUGAGAUCGGUAGGAGUUAAGAA   1
  ||||*||||=|||*||||||||||
targets:1963   UAACACUAGUCAUACUCAAUUCUU   1986

2.5 PREDICTED: Zea mays alpha-mannosidase I MNS5 (LOC103627708), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008648019.2
ncRNA:24   AUUGAGAUCGGUAGGAGUUAAGAA   1
  ||||*||||=|||*||||||||||
targets:2405   UAACACUAGUCAUACUCAAUUCUU   2428

2.5 PREDICTED: Zea mays alpha-mannosidase I MNS5 (LOC103627708), transcript variant X2, mRNA NA coding protein psRNATarget