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BaseInfo

ncRNA ID	novel_zma_miR4757
Species	Zea mays
Class	miRNA
Genome position	Chr2:216363747-216363843 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	1 - AGAUAUACUCCCUCCGUUUCUUUU - 24
Stem-loop(if miRNA)	--    -                                         A   AGAU AUACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCA U   |||| |||||||||||||||||||||||||||||||||||||||||   UCUA UAUGAGGGAGGCAAAGAAAAAUAAUCAGCGACCUAUCACGU U AA    A                                         U
Stem-loop sequence	AGAUAUACUCCCUCCGUUUCUUUUUAUUAGUCGCUGGAUAGUGCAAUUUUGCACUAUCCAGCGACUAAUAAAAAGAAACGGAGGGAGUAUAAUCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651544.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||||=| targets:1420   AAAAGAAACGGAGGGAGUAUAUUU   1443 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||||=| targets:2561   AAAAGAAACGGAGGGAGUAUAUUU   2584 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUA-GA   1   ||||||||||||||||||||||-|| targets:52   AAAAGAAACGGAGGGAGUAUAUGCU   76 Target Full Sequence	3.0	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
XM_008675770.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||||=* targets:1873   AAAAGAAACGGAGGGAGUAUAUUG   1896 Target Full Sequence	2.5	PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||*||| targets:1231   AAAAGAAACGGAGGGAGUAUUUCU   1254 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||*||| targets:1337   AAAAGAAACGGAGGGAGUAUUUCU   1360 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068381.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1173   AAAACGAAACGGAGGGAGUAUAUCA   1197 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956063.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1126   AAAACGAAACGGAGGGAGUAUAUCA   1150 Target Full Sequence	1.0	Zea mays clone 1556707 mRNA sequence	NA	coding protein	psRNATarget
EU973028.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1232   AAAACGAAACGGAGGGAGUAUAUCA   1256 Target Full Sequence	1.0	Zea mays clone 391970 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU945792.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUA-GA   1   *|||||||||||||||||||||-|| targets:1251   CAAAGAAACGGAGGGAGUAUAUGCU   1275 Target Full Sequence	3.0	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
BT088158.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1266   AAAACGAAACGGAGGGAGUAUAUCA   1290 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds	NA	coding protein	psRNATarget
EU964554.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUA-GA   1   *|||||||||||||||||||||-|| targets:1400   CAAAGAAACGGAGGGAGUAUAUGCU   1424 Target Full Sequence	3.0	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656167.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1285   AAAACGAAACGGAGGGAGUAUAUCA   1309 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001138729.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1466   AAAACGAAACGGAGGGAGUAUAUCA   1490 Target Full Sequence	1.0	Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA	NA	coding protein	psRNATarget
BT035950.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1466   AAAACGAAACGGAGGGAGUAUAUCA   1490 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656166.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|||||||||||||||||||* targets:1330   AAAACGAAACGGAGGGAGUAUAUCA   1354 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUAUAGA   1   ||||||||||||||||||||*||* targets:1665   AAAAGAAACGGAGGGAGUAUCUCG   1688 Target Full Sequence	2.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087188.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-|*|||||||||||||||||| targets:13   AAAACGUAACGGAGGGAGUAUAUCU   37 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0244C24 mRNA, complete cds	NA	coding protein	psRNATarget
BT065083.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:270   AAAACGAAACGGAGGGAGUAUAUAU   294 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669143.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:2805   AAAACGAAACGGAGGGAGUAUAUAU   2829 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008669142.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:2735   AAAACGAAACGGAGGGAGUAUAUAU   2759 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008669138.2	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:2867   AAAACGAAACGGAGGGAGUAUAUAU   2891 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547479.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:3245   AAAACGAAACGGAGGGAGUAUAUAU   3269 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547478.1	ncRNA:24   UUUU-CUUUGCCUCCCUCAUAUAGA   1   ||||-||||||||||||||||||*| targets:3245   AAAACGAAACGGAGGGAGUAUAUAU   3269 Target Full Sequence	1.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA	NA	coding protein	psRNATarget