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BaseInfo

ncRNA ID novel_zma_miR4755
Species Zea mays
Class miRNA
Genome position Chr2:97671379-97671467 [-]
Reference genome RefGen_v4
Source SRR2287162
Length 21
Mature sequence(if miRNA) 69 - UUUGGGAGCCACAGAACCGGA - 89
Stem-loop(if miRNA) --                     G                   C
  UUUGGGAGCCACAGAACCGGA GGGAUUGGAGGGGCUAGAA C
  ||||||||||||||||||||| ||||||||||||||||||| C
  AAACCCUCGGUGUUUUGGCCU CUCUAAUCUCCCCGAUCUU C
UC                     G                   C
Stem-loop sequence UUUGGGAGCCACAGAACCGGAGGGGAUUGGAGGGGCUAGAACCCCCUUCUAGCCCCUCUAAUCUCGUCCGGUUUUGUGGCUCCCAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166675.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|||||||||||||
targets:31   UCCGGUUUUGUGGCUCCCAAA   51

1.0 Sequence 4339 from Patent EP2559767 NA coding protein psRNATarget
LQ238344.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|||||||||||||
targets:31   UCCGGUUUUGUGGCUCCCAAA   51

1.0 Sequence 4339 from Patent EP2985353 NA coding protein psRNATarget
HI406214.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|||||||||||||
targets:31   UCCGGUUUUGUGGCUCCCAAA   51

1.0 Sequence 4339 from Patent EP2074227 NA coding protein psRNATarget
XM_008677028.2
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|||||||||||||
targets:2448   UCCGGUUUUGUGGCUCCCAAA   2468

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550525.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|||||||||||||
targets:2466   UCCGGUUUUGUGGCUCCCAAA   2486

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA NA coding protein psRNATarget
BT062360.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:1471   UCCGGUUUUGUGGCUCUCAAA   1491

2.5 Zea mays full-length cDNA clone ZM_BFb0286E11 mRNA, complete cds NA coding protein psRNATarget
X70154.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |=|||||=|||||||||||||
targets:273   UUCGGUUUUGUGGCUCCCAAA   293

1.0 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152) NA coding protein psRNATarget
X54212.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |=|||||=|||||||||||||
targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235

1.0 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120) NA coding protein psRNATarget
NM_001111958.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |=|||||=|||||||||||||
targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235

1.0 Zea mays protein b-32 (O6), mRNA NA coding protein psRNATarget
AY109436.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |=|||||=|||||||||||||
targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235

1.0 Zea mays CL1124_1 mRNA sequence NA coding protein psRNATarget
XM_020549837.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:3515   UCCGGUUUUGUGGCUCUCAAA   3535

2.5 PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001321373.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:3759   UCCGGUUUUGUGGCUCUCAAA   3779

2.5 Zea mays ARM repeat superfamily protein (LOC100381825), mRNA NA coding protein psRNATarget
XM_008674878.2
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:3721   UCCGGUUUUGUGGCUCUCAAA   3741

2.5 PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008674877.2
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:3746   UCCGGUUUUGUGGCUCUCAAA   3766

2.5 PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674876.2
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:3809   UCCGGUUUUGUGGCUCUCAAA   3829

2.5 PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549836.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=||||||||=||||
targets:4557   UCCGGUUUUGUGGCUCUCAAA   4577

2.5 PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X3, mRNA NA coding protein psRNATarget
EZ066710.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:77   UCCGGUUUUAUGGCUCCCAAA   97

2.5 TSA: Zea mays contig02344, mRNA sequence NA coding protein psRNATarget
EU944975.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:824   UCCGGUUUUCUGGCUCCCAAA   844

2.5 Zea mays clone 236700 mRNA sequence NA coding protein psRNATarget
BT065189.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:950   UCCGGUUUUAUGGCUCCCAAA   970

2.5 Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds NA coding protein psRNATarget
NM_001156624.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:1071   UCCGGUUUUAUGGCUCCCAAA   1091

2.5 Zea mays uncharacterized LOC100283725 (gpm911), mRNA NA coding protein psRNATarget
EU965698.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:1071   UCCGGUUUUAUGGCUCCCAAA   1091

2.5 Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds NA coding protein psRNATarget
XM_020553374.1
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:1278   UCCGGUUUUAUGGCUCCCAAA   1298

2.5 PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664337.2
ncRNA:21   AGGCCAAGACACCGAGGGUUU   1
  |||||||=|*|||||||||||
targets:2101   UCCGGUUUUCUGGCUCCCAAA   2121

2.5 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget
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