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BaseInfo

ncRNA ID	novel_zma_miR4750
Species	Zea mays
Class	miRNA
Genome position	Chr2:29575041-29575109 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - CAACGGUCGGCUGGACCAACGGUC - 24
Stem-loop(if miRNA)	--    G  C    -  A   A  -   GG      G   CAAC GU GGCU GG CCA CG GUC  CCGCGC A   |||| || |||| || ||| || |||  |||||| U   GUUG CA CCGA CC GGU GC CAG  GGCGCG C AG    G  A    G  -   -  A   --      U
Stem-loop sequence	CAACGGUCGGCUGGACCAACGGUCGGCCGCGCGAUCUGCGCGGGACACGUGGCCGAGCCAACGGUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068112.2	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:545   GACCGUUGGCCCGGCCGACCGUUG   568 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:697   GACCGUUGGCCCGGCCGACCGUUG   720 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:697   GACCGUUGGCCCGGCCGACCGUUG   720 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:522   GACCGUUGGCCCGGCCGACCGUUG   545 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:522   GACCGUUGGCCCGGCCGACCGUUG   545 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:370   GACCGUUGGCCCGGCCGACCGUUG   393 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   |||||||||*||=||||||||||| targets:2730   GACCGUUGGCCCGGCCGACCGUUG   2753 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT035311.1	ncRNA:24   CUG-GCAACCAGGUCGGCUGGCAAC   1   ||=-|||||*||||||=|||||||| targets:1232   GAUGCGUUGAUCCAGCUGACCGUUG   1256 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054J09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138290.1	ncRNA:24   CUG-GCAACCAGGUCGGCUGGCAAC   1   ||=-|||||*||||||=|||||||| targets:1232   GAUGCGUUGAUCCAGCUGACCGUUG   1256 Target Full Sequence	2.5	Zea mays Non-structural maintenance of chromosomes element 4 homolog A (LOC100193130), mRNA	NA	coding protein	psRNATarget
EU970330.1	ncRNA:24   CUG-GCAACCAGGUCGGCUGGCAAC   1   ||=-|||||*||||||=|||||||| targets:1283   GAUGCGUUGAUCCAGCUGACCGUUG   1307 Target Full Sequence	2.5	Zea mays clone 343427 mRNA sequence	NA	coding protein	psRNATarget
BT068453.1	ncRNA:24   CUG-GCAACCAGGUCGGCUGGCAAC   1   ||=-|||||*||||||=|||||||| targets:1412   GAUGCGUUGAUCCAGCUGACCGUUG   1436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0195E16 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   ***=**||||*||||||||||||| targets:554   CUAUUCUGGUGCAGCCGACCGUUG   577 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CUGGCAACCAGGUCGGCUGGCAAC   1   ***=**||||*||||||||||||| targets:554   CUAUUCUGGUGCAGCCGACCGUUG   577 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget