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BaseInfo

ncRNA ID	novel_zma_miR4747
Species	Zea mays
Class	miRNA
Genome position	Chr2:187389998-187390196 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - UCGUUUAGAGAACUGUUGGAGAAU - 24
Stem-loop(if miRNA)	--                    AU GG  G   U    ---U    -      U  -  ------CA   AAAAUAAGUUACAAAAACUACAUAAUGCAGUCAAC   UCUCCAAUAGUUCUCUAAAU  A  UU UAA UUUG    UUUG CAUCUA CC CA        UAA                                   A   ||||||||||||||||||||  |  || ||| ||||    |||| |||||| || ||        |||   AGAGGUUGUCAAGAGAUUUG  U  AA AUU AAAU    GAAC GUAGAU GG GU        GAU                                   U UA                    CU GA  G   U    UGUU    A      U  A  AAAAGAGA   GUAAACCGUUGGUAAAUAAUUGAGGGAUUUGUUUU
Stem-loop sequence	UCUCCAAUAGUUCUCUAAAUAUAGGUUGUAAUUUUGUUUUGCAUCUAUCCCACAUAAAAAAUAAGUUACAAAAACUACAUAAUGCAGUCAACAUUUUUGUUUAGGGAGUUAAUAAAUGGUUGCCAAAUGUAGAGAGAAAAUGAGGUUAGAUGACAAGUUGUUAAAUUUAGAAAGUUCGUUUAGAGAACUGUUGGAGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054396.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |||||||||||||||||||||=|| targets:1329   AUUCUCCAACAGUUCUCUAAAUGA   1352 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |||||||||||||||||||||=|| targets:2482   AUUCUCCAACAGUUCUCUAAAUGA   2505 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |||||||||||||||||||||=|| targets:2526   AUUCUCCAACAGUUCUCUAAAUGA   2549 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |||||||||||||||||||||=|| targets:2736   AUUCUCCAACAGUUCUCUAAAUGA   2759 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |||||||||||||||||||||=|| targets:2772   AUUCUCCAACAGUUCUCUAAAUGA   2795 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   UAAGAGGUUGUCAAGAGAUUUGCU   1   |*||*||||||||||||||||=|| targets:48   ACUCACCAACAGUUCUCUAAAUGA   71 Target Full Sequence	1.5	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget
XM_008676190.2	ncRNA:24   UAA-------GAGGUUGUCAAGAGAUUUGCU   1   |||-------||||||=||||||||||||*| targets:1838   AUUAGAGCAGCUCCAAUAGUUCUCUAAACAA   1868 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein At2g13690-like (LOC103650619), mRNA	NA	coding protein	psRNATarget