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BaseInfo

ncRNA ID novel_zma_miR4742
Species Zea mays
Class miRNA
Genome position Chr1:143647446-143647565 [+]
Reference genome RefGen_v4
Source SRR2287162
Length 21
Mature sequence(if miRNA) 100 - UUCCGGAAGAAACGAACGGCC - 120
Stem-loop(if miRNA) --U         -G   A      -AAC  -     C    -C     -AUCAAAA   AUAU
   UGUUCGUUU  UCC GGAAUG    CA GGAAU AUUC  AGCCG        CUU    A
   |||||||||  ||| ||||||    || ||||| ||||  |||||        |||
   GCAAGCAAA  AGG CCUUGC    GU CUUUG UAAG  UCGGC        GAG    A
CCG         GA   -      CUCC  A     U    UA     CAAACAAA   AUUA
Stem-loop sequence UUGUUCGUUUGUCCAGGAAUGAACCAGGAAUCAUUCCAGCCGAUCAAAACUUAUAUAAAUUAGAGAAACAAACCGGCUAUGAAUUGUUUCAUGCCUCCGUUCCGGAAGAAACGAACGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT037714.1
ncRNA:21   CCGGCAAGCAAAGAAGGCCUU   1
  |||*|||||||||||||||||
targets:1244   GGCAGUUCGUUUCUUCCGGAA   1264

1.0 Zea mays full-length cDNA clone ZM_BFb0189L11 mRNA, complete cds NA coding protein psRNATarget
NM_001143357.1
ncRNA:21   CCGGCAAGCAAAGAAGGCCUU   1
  |||*|||||||||||||||||
targets:1244   GGCAGUUCGUUUCUUCCGGAA   1264

1.0 Zea mays Vacuolar protein sorting-associated protein 22 homolog 1 (cl9441_1b), mRNA NA coding protein psRNATarget
EZ109252.1
ncRNA:21   CCGGCAAGCAAAGAAGGCCUU   1
  |*|||||||*|||||||||||
targets:74   GCCCGUUCGGUUCUUCCGGAA   94

1.5 TSA: Zea mays contig44911, mRNA sequence NA coding protein psRNATarget
XM_020546586.1
ncRNA:21   CCGGCAAGCAAAGAAGGCCUU   1
  ||||*||||||||||||*|||
targets:4480   GGCCAUUCGUUUCUUCCAGAA   4500

2.5 PREDICTED: Zea mays uncharacterized LOC103641404 (LOC103641404), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546587.1
ncRNA:21   CCGGCAAGCAAAGAAGGCCUU   1
  ||||*||||||||||||*|||
targets:4506   GGCCAUUCGUUUCUUCCAGAA   4526

2.5 PREDICTED: Zea mays uncharacterized LOC103641404 (LOC103641404), transcript variant X2, mRNA NA coding protein psRNATarget
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