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BaseInfo

ncRNA ID	novel_zma_miR4741
Species	Zea mays
Class	miRNA
Genome position	Chr2:157031982-157032114 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5105959;SRR5105961
Length	21
Mature sequence(if miRNA)	1 - UCCAGUUUGCAUGUGAGAACU - 21
Stem-loop(if miRNA)	--   A UUU      -     ----    AUA   -CUA   UAA    AGAA     --UACCAUC   A   UCC G   GCAUGU GAGAA    CUCA   GUG    AUC   UGCU    AGCCU         GGU G   ||| |   |||||| |||||    ||||   |||    |||   ||||    |||||         |||   AGG C   CGUAUA CUCUU    GGGU   CAC    UAG   ACGA    UCGGA         CCA U AA   - UAC      U     AACC    AAC   UUAG   UAG    --CG     CACUUACCC   A
Stem-loop sequence	UCCAGUUUGCAUGUGAGAACUCAAUAGUGCUAAUCUAAUGCUAGAAAGCCUUACCAUCGGUAGUAACCCCCAUUCACAGGCUGCAGCAGAUGAUGAUUCACCAAUGGGCCAAUUCUCUAUAUGCCAUCGGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655993.2	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |||||||||||*||||||||| targets:245   AGUUCUCACAUUCAAACUGGA   265 Target Full Sequence	1.5	PREDICTED: Zea mays beta-glucuronosyltransferase GlcAT14A (LOC103634466), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968095.1	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:969   AAUUCACACAUGGAAACUGGA   989 Target Full Sequence	2.5	Zea mays clone 314167 mRNA sequence	NA	coding protein	psRNATarget
BT041089.1	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1038   AAUUCACACAUGGAAACUGGA   1058 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172N05 mRNA, complete cds	NA	coding protein	psRNATarget
BT055560.1	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1058   AAUUCACACAUGGAAACUGGA   1078 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0028A21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156271.2	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1075   AAUUCACACAUGGAAACUGGA   1095 Target Full Sequence	2.5	Zea mays thaumatin-like protein 1a (LOC100283370), mRNA	NA	coding protein	psRNATarget
EU964518.1	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1076   AAUUCACACAUGGAAACUGGA   1096 Target Full Sequence	2.5	Zea mays clone 279477 thaumatin-like protein 1a precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EU966416.1	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1238   AAUUCACACAUGGAAACUGGA   1258 Target Full Sequence	2.5	Zea mays clone 294317 mRNA sequence	NA	coding protein	psRNATarget
XM_008669799.2	ncRNA:21   UCAAGAGUGUACGUUUGACCU   1   |*|||*||||||*|||||||| targets:1313   AAUUCACACAUGGAAACUGGA   1333 Target Full Sequence	2.5	PREDICTED: Zea mays thaumatin-like protein 1a (LOC100283370), transcript variant X1, mRNA	NA	coding protein	psRNATarget