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BaseInfo

ncRNA ID	novel_zma_miR4737
Species	Zea mays
Class	miRNA
Genome position	Chr1:74790289-74790402 [-]
Reference genome	RefGen_v4
Source	SRR1583941;SRR2647221;SRR2647387;SRR2647389;SRR2647390;SRR3341856
Length	21
Mature sequence(if miRNA)	94 - UUGGGAGCCACAAAACUGAAG - 114
Stem-loop(if miRNA)	--                      G         A                    CA   UUGGGAGCCACAAAACUGAAGG GAUUGGAGG GCUAGAAUCCCCUUCUUAUU  A   |||||||||||||||||||||| ||||||||| ||||||||||||||||||||   AACCUUCGGUGUUUUGGCUUCC CUAACCUCC CGAUCUUAGGGGAAGAAUAA  U CA                      A         C                    AU
Stem-loop sequence	UUGGGAGCCACAAAACUGAAGGGGAUUGGAGGAGCUAGAAUCCCCUUCUUAUUCAAUUAAAUAAGAAGGGGAUUCUAGCCCCUCCAAUCACCUUCGGUUUUGUGGCUUCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
X70154.1	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =|||=|||||||||||||||| targets:272   UUUCGGUUUUGUGGCUCCCAA   292 Target Full Sequence	1.0	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152)	NA	coding protein	psRNATarget
NM_001111958.1	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =|||=|||||||||||||||| targets:1214   UUUCGGUUUUGUGGCUCCCAA   1234 Target Full Sequence	1.0	Zea mays protein b-32 (O6), mRNA	NA	coding protein	psRNATarget
X54212.1	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =|||=|||||||||||||||| targets:1214   UUUCGGUUUUGUGGCUCCCAA   1234 Target Full Sequence	1.0	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120)	NA	coding protein	psRNATarget
AY109436.1	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =|||=|||||||||||||||| targets:1214   UUUCGGUUUUGUGGCUCCCAA   1234 Target Full Sequence	1.0	Zea mays CL1124_1 mRNA sequence	NA	coding protein	psRNATarget
HI406214.1	ncRNA:21   GAAG-UCAAAACACCGAGGGUU   1   ||||-=|||||||||||||||| targets:29   CUUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	3.0	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
JB166675.1	ncRNA:21   GAAG-UCAAAACACCGAGGGUU   1   ||||-=|||||||||||||||| targets:29   CUUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	3.0	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:21   GAAG-UCAAAACACCGAGGGUU   1   ||||-=|||||||||||||||| targets:29   CUUCCGGUUUUGUGGCUCCCAA   50 Target Full Sequence	3.0	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:21   GAAG-UCAAAACACCGAGGGUU   1   ||||-=|||||||||||||||| targets:2446   CUUCCGGUUUUGUGGCUCCCAA   2467 Target Full Sequence	3.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:21   GAAG-UCAAAACACCGAGGGUU   1   ||||-=|||||||||||||||| targets:2464   CUUCCGGUUUUGUGGCUCCCAA   2485 Target Full Sequence	3.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660357.2	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =||*|||||||||||||=||| targets:431   UUUGAGUUUUGUGGCUCUCAA   451 Target Full Sequence	2.5	PREDICTED: Zea mays Tobamovirus multiplication protein 2B (TIDP9243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154548.2	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =||*|||||||||||||=||| targets:497   UUUGAGUUUUGUGGCUCUCAA   517 Target Full Sequence	2.5	Zea mays Tobamovirus multiplication protein 2B (TIDP9243), mRNA	NA	coding protein	psRNATarget
EU957309.1	ncRNA:21   GAAGUCAAAACACCGAGGGUU   1   =||*|||||||||||||=||| targets:498   UUUGAGUUUUGUGGCUCUCAA   518 Target Full Sequence	2.5	Zea mays clone 1588304 TOM2B mRNA, complete cds	NA	coding protein	psRNATarget