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BaseInfo

ncRNA ID	novel_zma_miR4734
Species	Zea mays
Class	miRNA
Genome position	Chr1:3164093-3164222 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AGGUAGUGAACCAAACAGGCCCUU - 24
Stem-loop(if miRNA)	--A             UG G   AAAUG                -------------        CG   G    GGCCUGUUUGGUU  U GCU     UGCCACACUUUGCCUA             AGGUUAGU  UUC A    |||||||||||||  | |||     ||||||||||||||||             ||||||||  ||| A    CCGGACAAACCAA  G UGG     ACGGUGUGAAACGGAU             UCCAAUCA  AAG U UUC             GU A   AGUCA                UGAAAAGACGGAU        AU   U
Stem-loop sequence	AGGCCUGUUUGGUUUGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAACUGAGGUAGUGAACCAAACAGGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945170.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||||||||||||||||||||=||| targets:836   AAGGGCCUGUUUGGUUCACUGCCU   859 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||||||||||||||||||||=||| targets:1320   AAGGGCCUGUUUGGUUCACUGCCU   1343 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   *||||||||||||||||||||||| targets:108   UAGGGCCUGUUUGGUUCACUACCU   131 Target Full Sequence	0.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   *||||||||||||||||||||||| targets:108   UAGGGCCUGUUUGGUUCACUACCU   131 Target Full Sequence	0.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||||||=||||||||||=|||||| targets:888   AAGGGCUUGUUUGGUUCGCUACCU   911 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   UUC---CCGGACAAACCAAGUGAUGGA   1   =||---||||||||||||||||||||| targets:1625   GAGAUUGGCCUGUUUGGUUCACUACCU   1651 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   UUC---CCGGACAAACCAAGUGAUGGA   1   =||---||||||||||||||||||||| targets:1695   GAGAUUGGCCUGUUUGGUUCACUACCU   1721 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   UUC---CCGGACAAACCAAGUGAUGGA   1   =||---||||||||||||||||||||| targets:1695   GAGAUUGGCCUGUUUGGUUCACUACCU   1721 Target Full Sequence	0.0	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||*||=||||||||||||||=||| targets:604   AAAGGUCUGUUUGGUUCACUGCCU   627 Target Full Sequence	2.5	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||*||=||||||||||||||=||| targets:587   AAAGGUCUGUUUGGUUCACUGCCU   610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   ||*||=||||||||||||||=||| targets:622   AAAGGUCUGUUUGGUUCACUGCCU   645 Target Full Sequence	2.5	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UUCCCGGACAAACCAAGUGAUGGA   1   |||--|*||||||||||||||||| targets:1480   AAG--CAUGUUUGGUUCACUACCU   1501 Target Full Sequence	1.0	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget