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BaseInfo

ncRNA ID	novel_zma_miR4733
Species	Zea mays
Class	miRNA
Genome position	Chr1:33543738-33543869 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - CGACGUAAACGAACAAGGCCUUAG - 24
Stem-loop(if miRNA)	--U                UAC       AUGG   -    -  A     A  CG      UUCUCUAAA    AGGUCUUGUUCGUUUG   CGGAUUG    AUC GGAA CG UUUCA GC  AAUUAG         U    ||||||||||||||||   |||||||    ||| |||| || ||||| ||  ||||||    UCCGGAACAAGCAAAU   GCCUAAC    UGG CCUU GC AAGGU CG  UUAGUU         U GAU                GCA       ---G   U    A  -     -  -A      UCAAAUAUA
Stem-loop sequence	UAGGUCUUGUUCGUUUGUACCGGAUUGAUGGAUCGGAACGAUUUCAAGCCGAAUUAGUUCUCUAAAUUAUAUAAACUUUGAUUAGCUGGAACGAUUCCUGGUGCAAUCCGACGUAAACGAACAAGGCCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001138677.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =||||||||||||||||||||||| targets:494   UUAAGGCCUUGUUCGUUUACGUCG   517 Target Full Sequence	0.0	Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA	NA	coding protein	psRNATarget
BT035867.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =||||||||||||||||||||||| targets:494   UUAAGGCCUUGUUCGUUUACGUCG   517 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds	NA	coding protein	psRNATarget
BT084172.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =||||||||||||||||||||||| targets:509   UUAAGGCCUUGUUCGUUUACGUCG   532 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds	NA	coding protein	psRNATarget
AY103713.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =||||||||||||||||||||||| targets:524   UUAAGGCCUUGUUCGUUUACGUCG   547 Target Full Sequence	0.0	Zea mays PCO076540 mRNA sequence	NA	coding protein	psRNATarget
XM_008668968.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =||||||||||||||||||||||| targets:583   UUAAGGCCUUGUUCGUUUACGUCG   606 Target Full Sequence	0.0	PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676565.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*||||||||||||||||||||| targets:1083   CUUAGGCCUUGUUCGUUUACGUCG   1106 Target Full Sequence	0.0	PREDICTED: Zea mays NDR1/HIN1-like protein 10 (LOC103650970), mRNA	NA	coding protein	psRNATarget
XM_008650728.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   *||||||||||||||||||||||* targets:901   AUAAGGCCUUGUUCGUUUACGUCC   924 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103629641 (LOC103629641), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650727.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   *||||||||||||||||||||||* targets:901   AUAAGGCCUUGUUCGUUUACGUCC   924 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103629641 (LOC103629641), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||||||||||||||||||*||| targets:6   UUAAGGCCUUGUUCGUUUACAUCG   29 Target Full Sequence	1.5	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||||||||||||||||||*||| targets:6   UUAAGGCCUUGUUCGUUUACAUCG   29 Target Full Sequence	1.5	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||||||||||||||||||*||| targets:6   UUAAGGCCUUGUUCGUUUACAUCG   29 Target Full Sequence	1.5	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
EZ063705.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   |*||||||||||||||||=||||| targets:244   CCAAGGCCUUGUUCGUUUGCGUCG   267 Target Full Sequence	1.5	TSA: Zea mays contig64827, mRNA sequence	NA	coding protein	psRNATarget
EU971977.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*||||||||||||||||||||| targets:720   UUUAGGCCUUGUUCGUUUACGUCG   743 Target Full Sequence	0.0	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*|||||||||||||||=||||| targets:760   CUUAGGCCUUGUUCGUUUGCGUCG   783 Target Full Sequence	1.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ516643.1	ncRNA:24   GAU--UCCGGAACAAGCAAAUGCAGC   1   *||--||||||||||||||||||||| targets:130   AUAUCAGGCCUUGUUCGUUUACGUCG   155 Target Full Sequence	0.0	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008654032.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   *|||||||||||||||||*||||| targets:916   AUAAGGCCUUGUUCGUUUCCGUCG   939 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   *|||||||||||||||||*||||| targets:6431   AUAAGGCCUUGUUCGUUUCCGUCG   6454 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549360.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|||=||||||||||||||||| targets:1054   UUUAGGUCUUGUUCGUUUACGUCG   1077 Target Full Sequence	1.0	PREDICTED: Zea mays WRKY transcription factor WRKY76 (LOC103647425), mRNA	NA	coding protein	psRNATarget
EU952826.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =*|||||=||||||||||=||||| targets:644   UGAAGGCUUUGUUCGUUUGCGUCG   667 Target Full Sequence	2.5	Zea mays clone 1290653 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ060491.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*||||=||||||||||=||||| targets:121   UUUAGGCUUUGUUCGUUUGCGUCG   144 Target Full Sequence	2.5	TSA: Zea mays contig61613, mRNA sequence	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*||*|||||||||||||||||| targets:551   CUUAGACCUUGUUCGUUUACGUCG   574 Target Full Sequence	1.0	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*||*|||||||||||||||||| targets:2579   CUUAGACCUUGUUCGUUUACGUCG   2602 Target Full Sequence	1.0	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*||*|||||||||||||||||| targets:2582   CUUAGACCUUGUUCGUUUACGUCG   2605 Target Full Sequence	1.0	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001153908.1	ncRNA:24   GAU--UCCGGAACAAGCAAAUGCAGC   1   ||=--|||||||||||||||||*||| targets:1081   CUGUUAGGCCUUGUUCGUUUACAUCG   1106 Target Full Sequence	1.5	Zea mays plant-specific domain TIGR01627 family protein (LOC100280988), mRNA	NA	coding protein	psRNATarget
EU955083.1	ncRNA:24   GAU--UCCGGAACAAGCAAAUGCAGC   1   ||=--|||||||||||||||||*||| targets:1081   CUGUUAGGCCUUGUUCGUUUACAUCG   1106 Target Full Sequence	1.5	Zea mays clone 1508988 plant-specific domain TIGR01627 family protein mRNA, complete cds	NA	coding protein	psRNATarget
HI409560.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||*|||||||||||||*||||| targets:53   UUAAAGCCUUGUUCGUUUCCGUCG   76 Target Full Sequence	1.5	Sequence 7685 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241690.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||*|||||||||||||*||||| targets:53   UUAAAGCCUUGUUCGUUUCCGUCG   76 Target Full Sequence	1.5	Sequence 7685 from Patent EP2985353	NA	coding protein	psRNATarget
JB170021.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|||*|||||||||||||*||||| targets:53   UUAAAGCCUUGUUCGUUUCCGUCG   76 Target Full Sequence	1.5	Sequence 7685 from Patent EP2559767	NA	coding protein	psRNATarget
EU973171.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|||||||||||||||||*||| targets:651   UUUAGGCCUUGUUCGUUUACAUCG   674 Target Full Sequence	1.5	Zea mays clone 394490 mRNA sequence	NA	coding protein	psRNATarget
XM_008670105.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|||||||||||||||||*||| targets:1010   UUUAGGCCUUGUUCGUUUACAUCG   1033 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652540.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|*||||||||||||||||||| targets:1355   UUUAUGCCUUGUUCGUUUACGUCG   1378 Target Full Sequence	0.0	PREDICTED: Zea mays plasma membrane-bound peroxidase 2b (PER70), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|||||||||||||||||*||| targets:1652   UUUAGGCCUUGUUCGUUUACAUCG   1675 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   =|*|||||||||||||||||*||| targets:1652   UUUAGGCCUUGUUCGUUUACAUCG   1675 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
JB166387.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
HI405926.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
JB166365.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
HI405904.1	ncRNA:21   UCCGGAACAAGCAAAUGCAGC   1   |||||||||||||||||*||| targets:1   AGGCCUUGUUCGUUUACAUCG   21 Target Full Sequence	1.5	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008653755.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*|||||**|||||||||||||| targets:326   CUCAGGCCCCGUUCGUUUACGUCG   349 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541330.1	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*|||||**|||||||||||||| targets:408   CUCAGGCCCCGUUCGUUUACGUCG   431 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008653754.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*|||||**|||||||||||||| targets:590   CUCAGGCCCCGUUCGUUUACGUCG   613 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653753.2	ncRNA:24   GAUUCCGGAACAAGCAAAUGCAGC   1   ||*|||||**|||||||||||||| targets:792   CUCAGGCCCCGUUCGUUUACGUCG   815 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X1, mRNA	NA	coding protein	psRNATarget