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BaseInfo

ncRNA ID	novel_zma_miR4729
Species	Zea mays
Class	miRNA
Genome position	Chr1:95248118-95248237 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	97 - UGUUUGGUUUGAUGGCUAACUUGC - 120
Stem-loop(if miRNA)	--           A       -CU  C U            UUUU   ACCUAAGAUUAGUU   UGUUUGGUUUG UGGCUAA   UG C CAUUUUGCCUAA    UCU              U   ||||||||||| |||||||   || | ||||||||||||    |||   ACAAACCAAGC ACCGAUU   AC G GUGAAACGGAUU    AAU              U CG           -       UAU  A U            --CC   CAGCAAACUUAACU
Stem-loop sequence	UGUUUGGUUUGAUGGCUAACUUGCCUCAUUUUGCCUAAUUUUUCUACCUAAGAUUAGUUUUUCAAUUCAAACGACUAACCUUAGGCAAAGUGUGACAUAUUUAGCCACGAACCAAACAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008681615.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||=|||||||||||||| targets:1773   GCAAGUUAGUCAUCAAACCAAACA   1796 Target Full Sequence	1.0	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||=|||||||||||||| targets:1251   GCAAGUUAGUCAUCAAACCAAACA   1274 Target Full Sequence	1.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ091125.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |=|||||||=|||||||||||||| targets:53   GUAAGUUAGUCAUCAAACCAAACA   76 Target Full Sequence	1.0	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*|||||||||||||| targets:1328   GCAAGUUAGACAUCAAACCAAACA   1351 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*|||||||||||||| targets:2075   GCAAGUUAGACAUCAAACCAAACA   2098 Target Full Sequence	1.0	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*|||||||||||||| targets:2076   GCAAGUUAGACAUCAAACCAAACA   2099 Target Full Sequence	1.0	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   CGUU------CAAUCGGUAGUUUGGUUUGU   1   ||||------|||||=|||||||||||||| targets:231   GCAAAGUGUAGUUAGUCAUCAAACCAAACA   260 Target Full Sequence	1.0	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235461.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1456 from Patent EP2985353	NA	coding protein	psRNATarget
HI403420.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1545 from Patent EP2074227	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
JB163881.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1545 from Patent EP2559767	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
HI403444.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1569 from Patent EP2074227	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163656.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||||||*||||||| targets:101   GCAAGUUAGGCAUCAAUCCAAACA   124 Target Full Sequence	2.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235574.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1569 from Patent EP2985353	NA	coding protein	psRNATarget
JB163792.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1456 from Patent EP2559767	NA	coding protein	psRNATarget
JB163905.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1569 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
HI403331.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1456 from Patent EP2074227	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||||||*||||||| targets:101   GCAAGUUAGGCAUCAAUCCAAACA   124 Target Full Sequence	2.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235550.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGACAACAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1545 from Patent EP2985353	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||||||*||||||| targets:101   GCAAGUUAGGCAUCAAUCCAAACA   124 Target Full Sequence	2.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:101   GCAAGUUAGGCAGCAAACCAAACA   124 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008678546.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |||||||||*||*||||||||||| targets:518   GCAAGUUAGGCAGCAAACCAAACA   541 Target Full Sequence	2.5	PREDICTED: Zea mays glycine-rich protein (LOC100272819), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ086875.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   *=||*||||=|||||||||||||| targets:6   AUAAUUUAGUCAUCAAACCAAACA   29 Target Full Sequence	1.0	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   *=||*||||=|||||||||||||| targets:35   AUAAUUUAGUCAUCAAACCAAACA   58 Target Full Sequence	1.0	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
EU967316.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   |=||||||**|||||||||||||| targets:579   GUAAGUUAUGCAUCAAACCAAACA   602 Target Full Sequence	2.0	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   **|||||||=||*||||||||||| targets:3535   AAAAGUUAGUCAGCAAACCAAACA   3558 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   **|||||||=||*||||||||||| targets:3663   AAAAGUUAGUCAGCAAACCAAACA   3686 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   **|||||||=||*||||||||||| targets:3670   AAAAGUUAGUCAGCAAACCAAACA   3693 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU964450.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   *|||||||**|||||||||||||| targets:1112   UCAAGUUAUGCAUCAAACCAAACA   1135 Target Full Sequence	2.0	Zea mays clone 278961 pectinesterase inhibitor domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   *=|||||||*||*||||||||||| targets:1   AUAAGUUAGGCAGCAAACCAAACA   24 Target Full Sequence	2.5	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008649809.2	ncRNA:24   CGUUCAAUCGGUAGUUUGGUUUGU   1   *=|=*|||*=|||||||||||||| targets:3250   CUAGCUUAUUCAUCAAACCAAACA   3273 Target Full Sequence	2.0	PREDICTED: Zea mays NLP transcription factor (NLP8), transcript variant X1, mRNA	NA	coding protein	psRNATarget