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BaseInfo

ncRNA ID novel_zma_miR4727
Species Zea mays
Class miRNA
Genome position Chr1:141833806-141833858 [-]
Reference genome RefGen_v4
Source SRR2287162;SRR2287163;SRR5451005
Length 23
Mature sequence(if miRNA) 1 - UUGGAGGGGAUUGAUACAGAUUG - 23
Stem-loop(if miRNA) --GC    -      A          A
    UUGU UCGGUU UUUUCAAUCC U
    |||| |||||| ||||||||||
    GACA AGUUAG GGAGGUUAGG A
GUUA    U      G          U
Stem-loop sequence GCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACAGAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658561.2
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||||
targets:292   CAAUCCGUAUCAAUCCCCUCCAA   314

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||||
targets:1971   CAAUCCGUAUCAAUCCCCUCCAA   1993

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||||
targets:1971   CAAUCCGUAUCAAUCCCCUCCAA   1993

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||||
targets:13   CAAUCCGUAUCAAUCCCCUCCAA   35

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||||
targets:690   CAAUCCGUAUCAAUCCCCUCCAA   712

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:967   CAAUCCGUAUCAAUCCCCUUCAA   989

2.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU956568.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =||||*|||||||||||||||||
targets:1621   UAAUCCGUAUCAAUCCCCUCCAA   1643

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
BT041454.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:1488   CAAUCCGUAUCAAUCCCCUUCAA   1510

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:1488   CAAUCCGUAUCAAUCCCCUUCAA   1510

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:1474   CAAUCCGUAUCAAUCCCCUUCAA   1496

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:1456   CAAUCCGUAUCAAUCCCCUUCAA   1478

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||=|||
targets:1412   CAAUCCGUAUCAAUCCCCUUCAA   1434

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||=|
targets:1076   CAAUCCGUAUCAAUCCCCUCCGA   1098

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*||||=||||||||||||
targets:1189   CAAUCCGUAUUAAUCCCCUCCAA   1211

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||||||=|
targets:1038   CAAUCCGUAUCAAUCCCCUCCGA   1060

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*||||=||||||||||||
targets:1151   CAAUCCGUAUUAAUCCCCUCCAA   1173

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||=|||||||
targets:999   CAAUCCGUAUCAAUCUCCUCCAA   1021

2.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||||=|||||
targets:827   CAAUCCGUAUCAAUCCCUUCCAA   849

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU972046.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*||||||||||||||=||
targets:775   CAAUCCGUAUCAAUCCCCUCUAA   797

2.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008666525.2
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:908   CAAUCCAUAUCAAUCCCCUCCAA   930

2.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
NM_001156482.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||*|||||||
targets:879   CAAUCCGUAUCAAUCACCUCCAA   901

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||*|||||||||*|||||||
targets:879   CAAUCCGUAUCAAUCACCUCCAA   901

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
EU959345.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:836   CAAUCCAUAUCAAUCCCCUCCAA   858

2.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:835   CAAUCCAUAUCAAUCCCCUCCAA   857

2.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:837   CAAUCCAUAUCAAUCCCCUCCAA   859

2.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:889   CAAUCCAUAUCAAUCCCCUCCAA   911

2.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  |||||**||||||||||||||||
targets:436   CAAUCCAUAUCAAUCCCCUCCAA   458

2.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_008649902.2
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =|||=|*|*||||||||||||||
targets:1671   UAAUUUCUCUCAAUCCCCUCCAA   1693

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT067571.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =|||=|*|*||||||||||||||
targets:1628   UAAUUUCUCUCAAUCCCCUCCAA   1650

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
BT064254.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =|||=|*|*||||||||||||||
targets:1641   UAAUUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
NM_001349063.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =|||=|*|*||||||||||||||
targets:1641   UAAUUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
EU959053.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  ||**|**||||||||||||||||
targets:835   CAMYCCAUAUCAAUCCCCUCCAA   857

2.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
AY110399.1
ncRNA:23   GUUAGACAUAGUUAGGGGAGGUU   1
  =|*|*|||||||*||||||||||
targets:439   UACUAUGUAUCAUUCCCCUCCAA   461

2.5 Zea mays CL37809_1 mRNA sequence NA coding protein psRNATarget
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