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BaseInfo

ncRNA ID novel_zma_miR4718
Species Zea mays
Class miRNA
Genome position Chr10:88844582-88844675 [+]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 71 - AAAGAAACGGAGGGAGUAUAUAUU - 94
Stem-loop(if miRNA) --A                                           A
   AUAUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUA A
   |||||||||||||||||||||||||||||||||||||||||||
   UAUAUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCACGU A
UUA                                           U
Stem-loop sequence AAUAUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAAAUUGCACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUAUAUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546173.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *|||||||||||||||||||||||
targets:1457   UAUAUAUACUCCCUCCGUUUCUUU   1480

0.0 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   UUAUAU-AUGAGGGAGGCAAAGAAA   1
  ||||||-||||||||||||||||||
targets:1970   AAUAUACUACUCCCUCCGUUUCUUU   1994

2.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   UUAUAU-AUGAGGGAGGCAAAGAAA   1
  ||||||-||||||||||||||||||
targets:2037   AAUAUACUACUCCCUCCGUUUCUUU   2061

2.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546695.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2198   AAUUAUAUACUCCCUCCGUUUCUUU   2222

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008666445.2
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2198   AAUUAUAUACUCCCUCCGUUUCUUU   2222

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020546694.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2198   AAUUAUAUACUCCCUCCGUUUCUUU   2222

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020546685.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2219   AAUUAUAUACUCCCUCCGUUUCUUU   2243

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546687.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2219   AAUUAUAUACUCCCUCCGUUUCUUU   2243

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546686.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2219   AAUUAUAUACUCCCUCCGUUUCUUU   2243

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546691.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2198   AAUUAUAUACUCCCUCCGUUUCUUU   2222

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546689.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2157   AAUUAUAUACUCCCUCCGUUUCUUU   2181

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546683.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2212   AAUUAUAUACUCCCUCCGUUUCUUU   2236

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546684.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2237   AAUUAUAUACUCCCUCCGUUUCUUU   2261

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546692.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2198   AAUUAUAUACUCCCUCCGUUUCUUU   2222

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020546693.1
ncRNA:24   UUA-UAUAUGAGGGAGGCAAAGAAA   1
  |||-|||||||||||||||||||||
targets:2136   AAUUAUAUACUCCCUCCGUUUCUUU   2160

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA NA coding protein psRNATarget
HI407305.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAG-AAA   1
  ||||||||||||||||||||-|||
targets:1   AUAUAUACUCCCUCCGUUUCGUUU   24

3.0 Sequence 5430 from Patent EP2074227 NA coding protein psRNATarget
JB167766.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAG-AAA   1
  ||||||||||||||||||||-|||
targets:1   AUAUAUACUCCCUCCGUUUCGUUU   24

3.0 Sequence 5430 from Patent EP2559767 NA coding protein psRNATarget
LQ239435.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAG-AAA   1
  ||||||||||||||||||||-|||
targets:1   AUAUAUACUCCCUCCGUUUCGUUU   24

3.0 Sequence 5430 from Patent EP2985353 NA coding protein psRNATarget
HI403267.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||||*|||=|||||||||||||||
targets:94   AAUAAAUAUUCCCUCCGUUUCUUU   117

1.0 Sequence 1392 from Patent EP2074227 NA coding protein psRNATarget
LQ235397.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||||*|||=|||||||||||||||
targets:94   AAUAAAUAUUCCCUCCGUUUCUUU   117

1.0 Sequence 1392 from Patent EP2985353 NA coding protein psRNATarget
JB163728.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||||*|||=|||||||||||||||
targets:94   AAUAAAUAUUCCCUCCGUUUCUUU   117

1.0 Sequence 1392 from Patent EP2559767 NA coding protein psRNATarget
EU968044.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAG-AAA   1
  *||||||||||||||||||||-|||
targets:1018   UAUAUAUACUCCCUCCGUUUCGUUU   1042

3.0 Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds NA coding protein psRNATarget
BT035546.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAG-AAA   1
  *||||||||||||||||||||-|||
targets:906   UAUAUAUACUCCCUCCGUUUCGUUU   930

3.0 Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|||||||=|||||||||||||
targets:1349   AACAUAUACUUCCUCCGUUUCUUU   1372

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|||||||=|||||||||||||
targets:2490   AACAUAUACUUCCUCCGUUUCUUU   2513

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
JB163748.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |||=-|||||||||||||||||||
targets:6   AAUG-AUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1412 from Patent EP2559767 NA coding protein psRNATarget
LQ235417.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |||=-|||||||||||||||||||
targets:6   AAUG-AUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1412 from Patent EP2985353 NA coding protein psRNATarget
HI403287.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |||=-|||||||||||||||||||
targets:6   AAUG-AUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1412 from Patent EP2074227 NA coding protein psRNATarget
EZ061772.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||-||||||||||||||||||||
targets:179   GAU-UAUACUCCCUCCGUUUCUUU   201

0.0 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |=|-||||||||||||||||||||
targets:1595   AGU-UAUACUCCCUCCGUUUCUUU   1617

0.0 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:24   UUAU-AUAUGAGGGAGGCAAAGAAA   1
  *|||-|||||||||||=||||||||
targets:1993   UAUAAUAUACUCCCUCUGUUUCUUU   2017

1.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
LQ239400.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|=||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUU   23

1.0 Sequence 5395 from Patent EP2985353 NA coding protein psRNATarget
JB167731.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|=||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUU   23

1.0 Sequence 5395 from Patent EP2559767 NA coding protein psRNATarget
HI407270.1
ncRNA:23   UAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|=||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUU   23

1.0 Sequence 5395 from Patent EP2074227 NA coding protein psRNATarget
HI403369.1
ncRNA:24   UUAU--AUAUGAGGGAGGCAAAGAAA   1
  ||*|--||||||||||||||||||||
targets:3   AAAACUUAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   UUAU--AUAUGAGGGAGGCAAAGAAA   1
  ||*|--||||||||||||||||||||
targets:3   AAAACUUAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
JB163830.1
ncRNA:24   UUAU--AUAUGAGGGAGGCAAAGAAA   1
  ||*|--||||||||||||||||||||
targets:3   AAAACUUAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   UUAUA---UAUGAGGGAGGCAAAGAAA   1
  *||=|---|||||||||||||||||||
targets:1142   CAUGUUGGAUACUCCCUCCGUUUCUUU   1168

3.0 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   UUAU-AUA-UGAGGGAGGCAAAGAAA   1
  |||=-|||-|||||||||||||||||
targets:2788   AAUGCUAUUACUCCCUCCGUUUCUUU   2813

2.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   UUAU-AUA-UGAGGGAGGCAAAGAAA   1
  |||=-|||-|||||||||||||||||
targets:2805   AAUGCUAUUACUCCCUCCGUUUCUUU   2830

2.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   UUAU-AUA-UGAGGGAGGCAAAGAAA   1
  |||=-|||-|||||||||||||||||
targets:2911   AAUGCUAUUACUCCCUCCGUUUCUUU   2936

2.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546613.1
ncRNA:24   UUAU-AUA-UGAGGGAGGCAAAGAAA   1
  |||=-|||-|||||||||||||||||
targets:3690   AAUGCUAUUACUCCCUCCGUUUCUUU   3715

2.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
HI410196.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
HI408710.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
JB169171.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
LQ242326.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
JB170657.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
LQ240840.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
EU973473.1
ncRNA:24   UUAU----AUAUGAGGGAGGCAAAGAAA   1
  *|||----|=||||||||||||||||||
targets:639   UAUAAACUUGUACUCCCUCCGUUUCUUU   666

1.0 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
EU952378.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||*|||||||||||||||||*|||
targets:707   AAGAUAUACUCCCUCCGUUUAUUU   730

1.5 Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT070166.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |=||*=||||||||||||||=|||
targets:758   AGUACGUACUCCCUCCGUUUUUUU   781

2.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |=||*=||||||||||||||=|||
targets:758   AGUACGUACUCCCUCCGUUUUUUU   781

2.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
BT068381.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1103   GAUGAAUACUCCCUCUGUUUCUUU   1126

1.5 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1056   GAUGAAUACUCCCUCUGUUUCUUU   1079

1.5 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
EU973028.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1162   GAUGAAUACUCCCUCUGUUUCUUU   1185

1.5 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT088158.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1196   GAUGAAUACUCCCUCUGUUUCUUU   1219

1.5 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  |||**|||||||||||||||||||
targets:135   AAUUAAUACUCCCUCCGUUUCUUU   158

0.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008656167.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1215   GAUGAAUACUCCCUCUGUUUCUUU   1238

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1396   GAUGAAUACUCCCUCUGUUUCUUU   1419

1.5 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1396   GAUGAAUACUCCCUCUGUUUCUUU   1419

1.5 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656166.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||=*||||||||||=||||||||
targets:1260   GAUGAAUACUCCCUCUGUUUCUUU   1283

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235409.1
ncRNA:24   UUAUAU-AUGAGGGAGGCAAAGAAA   1
  |||-||-||||||||||||||||||
targets:5   AAU-UAGUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   UUAUAUA-UGAGGGAGGCAAAGAAA   1
  |*|=|||-|||||||||||||||||
targets:4   AUUGUAUUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
HI403279.1
ncRNA:24   UUAUAU-AUGAGGGAGGCAAAGAAA   1
  |||-||-||||||||||||||||||
targets:5   AAU-UAGUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
HI403401.1
ncRNA:24   UUAUAUA-UGAGGGAGGCAAAGAAA   1
  |*|=|||-|||||||||||||||||
targets:4   AUUGUAUUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163740.1
ncRNA:24   UUAUAU-AUGAGGGAGGCAAAGAAA   1
  |||-||-||||||||||||||||||
targets:5   AAU-UAGUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
JB163862.1
ncRNA:24   UUAUAUA-UGAGGGAGGCAAAGAAA   1
  |*|=|||-|||||||||||||||||
targets:4   AUUGUAUUACUCCCUCCGUUUCUUU   28

2.0 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
BT017382.1
ncRNA:24   UUA---UAUAUGAGGGAGGCAAAGA-AA   1
  |=|---|||||||||||||||||||-||
targets:686   AGUUUCAUAUACUCCCUCCGUUUCUCUU   713

3.0 Zea mays clone EL01N0326E08.c mRNA sequence NA coding protein psRNATarget
EU970288.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  *||--||=||||||||=|||||||||
targets:1323   CAUGCAUGUACUCCCUUCGUUUCUUU   1348

2.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  =||--|*|||||||||||||||||||
targets:1535   GAUGAAGAUACUCCCUCCGUUUCUUU   1560

0.0 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
LQ242145.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=|||||||||=||||||||
targets:1   AUGUACUCCCUCUGUUUCUUU   21

2.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
JB170476.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=|||||||||=||||||||
targets:1   AUGUACUCCCUCUGUUUCUUU   21

2.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
HI410015.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  ||=|||||||||=||||||||
targets:1   AUGUACUCCCUCUGUUUCUUU   21

2.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
LQ235529.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||**|||||||||||||||||||
targets:5   GAUUCAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1524 from Patent EP2985353 NA coding protein psRNATarget
JB163860.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||**|||||||||||||||||||
targets:5   GAUUCAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1524 from Patent EP2559767 NA coding protein psRNATarget
HI403399.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =||**|||||||||||||||||||
targets:5   GAUUCAUACUCCCUCCGUUUCUUU   28

0.0 Sequence 1524 from Patent EP2074227 NA coding protein psRNATarget
EU964901.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =*||*=||||||||||||||||||
targets:491   GUUAAGUACUCCCUCCGUUUCUUU   514

1.0 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
EU974849.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =*||*=||||||||||||||||||
targets:563   GUUAAGUACUCCCUCCGUUUCUUU   586

1.0 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  =*||*=||||||||||||||||||
targets:563   GUUAAGUACUCCCUCCGUUUCUUU   586

1.0 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   UUAUA--UAUGAGGGAGGCAAAGAAA   1
  *|||*--|||||||||||||||||||
targets:222   CAUACCAAUACUCCCUCCGUUUCUUU   247

2.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ||-|*=||||||||||||||||||
targets:159   AA-AAGUACUCCCUCCGUUUCUUU   181

1.0 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  ==*|*|||||||||||||||||||
targets:2429   GGGACAUACUCCCUCCGUUUCUUU   2452

0.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
JB169789.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  **|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUU   21

0.0 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
HI409328.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  **|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUU   21

0.0 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
LQ241458.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  **|||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUU   21

0.0 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
HI406159.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:3   AGUCAGUCUACUCCCUCCGUUUUUUU   28

2.5 Sequence 4284 from Patent EP2074227 NA coding protein psRNATarget
LQ238289.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:3   AGUCAGUCUACUCCCUCCGUUUUUUU   28

2.5 Sequence 4284 from Patent EP2985353 NA coding protein psRNATarget
JB166620.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:3   AGUCAGUCUACUCCCUCCGUUUUUUU   28

2.5 Sequence 4284 from Patent EP2559767 NA coding protein psRNATarget
EZ112475.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:324   CAUG-AUACUUCCUCCGUUUUUUU   346

2.5 TSA: Zea mays contig48136, mRNA sequence NA coding protein psRNATarget
EU944152.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:118   AGUCAGUCUACUCCCUCCGUUUUUUU   143

2.5 Zea mays clone 1709939 mRNA sequence NA coding protein psRNATarget
NM_001149263.2
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:698   CAUG-AUACUUCCUCCGUUUUUUU   720

2.5 Zea mays hypothetical protein (pco106324), mRNA NA coding protein psRNATarget
BT088169.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:779   CAUG-AUACUUCCUCCGUUUUUUU   801

2.5 Zea mays full-length cDNA clone ZM_BFc0042M19 mRNA, complete cds NA coding protein psRNATarget
NM_001196915.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:779   CAUG-AUACUUCCUCCGUUUUUUU   801

2.5 Zea mays hypothetical protein (pco106324), mRNA NA coding protein psRNATarget
EU969134.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:794   CAUG-AUACUUCCUCCGUUUUUUU   816

2.5 Zea mays clone 326231 mRNA sequence NA coding protein psRNATarget
EU958432.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:702   CAUG-AUACUUCCUCCGUUUUUUU   724

2.5 Zea mays clone 1690368 mRNA sequence NA coding protein psRNATarget
NM_001317854.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:704   CAUG-AUACUUCCUCCGUUUUUUU   726

2.5 Zea mays hypothetical protein (pco106324), transcript variant 1, mRNA NA coding protein psRNATarget
EU957987.1
ncRNA:24   UUAUAUAUGAGGGAGGCAAAGAAA   1
  *||=-|||||=|||||||||=|||
targets:798   CAUG-AUACUUCCUCCGUUUUUUU   820

2.5 Zea mays clone 1639383 mRNA sequence NA coding protein psRNATarget
BT066825.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1046   AGUCAGUCUACUCCCUCCGUUUUUUU   1071

2.5 Zea mays full-length cDNA clone ZM_BFb0075I11 mRNA, complete cds NA coding protein psRNATarget
AY104314.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1059   AGUCAGUCUACUCCCUCCGUUUUUUU   1084

2.5 Zea mays PCO075251 mRNA sequence NA coding protein psRNATarget
XM_008678521.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1022   AGUCAGUCUACUCCCUCCGUUUUUUU   1047

2.5 PREDICTED: Zea mays GDT1-like protein 4 (LOC100272523), transcript variant X2, mRNA NA coding protein psRNATarget
BT061994.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1043   AGUCAGUCUACUCCCUCCGUUUUUUU   1068

2.5 Zea mays full-length cDNA clone ZM_BFb0204L14 mRNA, complete cds NA coding protein psRNATarget
XM_008678520.2
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1152   AGUCAGUCUACUCCCUCCGUUUUUUU   1177

2.5 PREDICTED: Zea mays GDT1-like protein 4 (LOC100272523), transcript variant X1, mRNA NA coding protein psRNATarget
BT038889.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1250   AGUCAGUCUACUCCCUCCGUUUUUUU   1275

2.5 Zea mays full-length cDNA clone ZM_BFb0338D16 mRNA, complete cds NA coding protein psRNATarget
NM_001146992.1
ncRNA:24   UUA--UAUAUGAGGGAGGCAAAGAAA   1
  |=|--=|*||||||||||||||=|||
targets:1250   AGUCAGUCUACUCCCUCCGUUUUUUU   1275

2.5 Zea mays GDT1-like protein 4 (LOC100272523), mRNA NA coding protein psRNATarget
LQ240700.1
ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1
  ||-||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUU   21

2.0 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
JB170422.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
LQ242091.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
JB169031.1
ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1
  ||-||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUU   21

2.0 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
HI409961.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
LQ241075.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
HI408570.1
ncRNA:20   AU-AUGAGGGAGGCAAAGAAA   1
  ||-||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUU   21

2.0 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
HI408945.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
JB169406.1
ncRNA:21   UAUAUGAGGGAGGCAAAGAAA   1
  |*=||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUU   21

1.0 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
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