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BaseInfo

ncRNA ID	novel_zma_miR4717
Species	Zea mays
Class	miRNA
Genome position	Chr1:278724050-278724129 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	21
Mature sequence(if miRNA)	1 - UGGAUUAUGGUGGAAUGGUAG - 21
Stem-loop(if miRNA)	--U    AUA        G   U  CA     U     UUU    CCAU   AUCAUGAU CCA CU  GUGUG GUUUG   C    ||||   |||||||| ||| ||  ||||| |||||   U    GGUA   UGGUAUUA GGU GA  UAUAU UAGAU   C GAU    AGG        -   U  -A     -     CCU
Stem-loop sequence	UCCAUAUAAUCAUGAUGCCAUCUCAGUGUGUGUUUGUUUCUCUCCUAGAUUAUAUAAGUUGGAUUAUGGUGGAAUGGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645727.2	ncRNA:21   GAUGGUAAGGUGGUAUUAGGU   1   |||*||||=|||||||||||| targets:3867   CUAACAUUUCACCAUAAUCCA   3887 Target Full Sequence	2.5	PREDICTED: Zea mays Translocase of chloroplast 159 chloroplastic (LOC100381654), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152434.1	ncRNA:21   GAUGGUAAGGUGGUAUUAGGU   1   |||||*|||||||||||*||| targets:1007   CUACCUUUCCACCAUAACCCA   1027 Target Full Sequence	2.5	Zea mays FIP1 (LOC100279424), mRNA	NA	coding protein	psRNATarget
BT054221.1	ncRNA:21   GAUGGUAAGGUGGUAUUAGGU   1   |||||*|||||||||||*||| targets:1007   CUACCUUUCCACCAUAACCCA   1027 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:21   GAUGGUAAGGUGGUAUUAGGU   1   |||||*||*|||||||||||| targets:1070   CUACCCUUACACCAUAAUCCA   1090 Target Full Sequence	2.5	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
BT036602.1	ncRNA:21   GAUGGUAAGGUGGUAUUAGGU   1   |||||*||*|||||||||||| targets:1070   CUACCCUUACACCAUAAUCCA   1090 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget