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BaseInfo

ncRNA ID	novel_zma_miR4716
Species	Zea mays
Class	miRNA
Genome position	Chr1:302480904-302480991 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	65 - AAUCCAUAUGGAUUGAGGAGGAUU - 88
Stem-loop(if miRNA)	--                  A      -A         A  CCC   AAUCCAUAUGGAUUGAGG GGAUUG  AGGGGUUUU AU   U   |||||||||||||||||| ||||||  ||||||||| ||   A   UUAGGUAUACCUAACUUC CCUAAC  UCCCUAAAA UG   G AG                  C      CC         C  AAU
Stem-loop sequence	AAUCCAUAUGGAUUGAGGAGGAUUGAAGGGGUUUUAAUCCCUAGUAAGUCAAAAUCCCUCCCAAUCCCCUUCAAUCCAUAUGGAUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169285.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||||||||||||||||||||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	0.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||||||||||||||||||||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	0.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||||||||||||||||||||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	0.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:1971   AAUCCCCCUCAAUCCAUAUGGAUU   1994 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1889   GGUUAUUUUCAAUCCAUAUGGAUU   1912 Target Full Sequence	2.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:608   AAUCCCCCUCAAUCCAUAUGGAUU   631 Target Full Sequence	1.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:1211   AAUCCCCCUCAAUCCAUAUGGAUU   1234 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:851   AAUCCCCCUCAAUCCAUAUGGAUU   874 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:769   GGUUAUUUUCAAUCCAUAUGGAUU   792 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	1.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	1.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:909   AAUCCCCCUCAAUCCAUAUGGAUU   932 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:912   AAUCCCCCUCAAUCCAUAUGGAUU   935 Target Full Sequence	1.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:372   AAUCCCCCUCAAUCCAUAUGGAUU   395 Target Full Sequence	1.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:23   UAGGAGGAGUUAGGUAUACCUAA   1   =|=*|==|=|||||||||||||| targets:1   GUUAUUUUUAAUCCAUAUGGAUU   23 Target Full Sequence	3.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
HI409817.1	ncRNA:23   UAGGAGGAGUUAGGUAUACCUAA   1   =|=*|==|=|||||||||||||| targets:1   GUUAUUUUUAAUCCAUAUGGAUU   23 Target Full Sequence	3.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
JB170278.1	ncRNA:23   UAGGAGGAGUUAGGUAUACCUAA   1   =|=*|==|=|||||||||||||| targets:1   GUUAUUUUUAAUCCAUAUGGAUU   23 Target Full Sequence	3.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:896   GGUUCUACCCCAAUCCAUAUGGAUU   920 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|=|||||||||||||||| targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*=||||||||||||||||| targets:1075   AAUCCCUCUCAAUCCAUAUGGAUU   1098 Target Full Sequence	2.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|=|||||||||||||| targets:993   GGUUAUUUUUAAUCCAUAUGGAUU   1016 Target Full Sequence	3.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||=*|=|||||||||||||||| targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145 Target Full Sequence	2.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008670868.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||*|=||||||||=|||||||||| targets:2610   AAACUUCCUCAAUUCAUAUGGAUU   2633 Target Full Sequence	1.5	PREDICTED: Zea mays elongation factor G-2, chloroplastic (LOC103646146), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =||||*|=|||||||||||||||| targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=*|-||*||||||||||||||| targets:1617   GGUUAUACCCCAAUCCAUAUGGAUU   1641 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
EU948993.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||=|*|||||=|||||||||||| targets:597   AAUUCCCCUCAGUCCAUAUGGAUU   620 Target Full Sequence	2.5	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
HI406948.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||*|=||||||||=|||||||||| targets:52   AAACUUCCUCAAUUCAUAUGGAUU   75 Target Full Sequence	1.5	Sequence 5073 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239078.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||*|=||||||||=|||||||||| targets:52   AAACUUCCUCAAUUCAUAUGGAUU   75 Target Full Sequence	1.5	Sequence 5073 from Patent EP2985353	NA	coding protein	psRNATarget
JB167409.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||*|=||||||||=|||||||||| targets:52   AAACUUCCUCAAUUCAUAUGGAUU   75 Target Full Sequence	1.5	Sequence 5073 from Patent EP2559767	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-|||||||||||||||||| targets:1549   GGUUCUACCUCAAUCCAUAUGGAUU   1573 Target Full Sequence	2.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||*|||||||| targets:3929   AAUCCCCCUCAAUCCCUAUGGAUU   3952 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||**||||||||||||||||| targets:2087   AAUCCCACUCAAUCCAUAUGGAUU   2110 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||**|||||||||||||||||| targets:1610   AAUCACCCUCAAUCCAUAUGGAUU   1633 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1528   GGUUAUUUUCAAUCCAUAUGGAUU   1551 Target Full Sequence	2.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||**|||||||||||||||||| targets:1610   AAUCACCCUCAAUCCAUAUGGAUU   1633 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:1528   GGUUAUUUUCAAUCCAUAUGGAUU   1551 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||**||||||||||||||||| targets:1370   AAUCCCACUCAAUCCAUAUGGAUU   1393 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||||*|||||||||*||||||| targets:883   AAUCCUGCUCAAUCCACAUGGAUU   906 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||||*|||||||||*||||||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||||*|||||||||*||||||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||*||*|||||||||||||||||| targets:95   AAACCCCCUCAAUCCAUAUGGAUU   118 Target Full Sequence	1.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:23   GGUUAUUUUCAAUCCAUAUGGAUU   46 Target Full Sequence	2.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||||*|||||||||*||||||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||*|||||||| targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98 Target Full Sequence	2.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
HI407338.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||*|||||||| targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98 Target Full Sequence	2.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
JB167799.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||||*|||||||||*|||||||| targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98 Target Full Sequence	2.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:1909   GGUUCUACCCCAAUCCAUAUGGAUU   1933 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:1909   GGUUCUACCCCAAUCCAUAUGGAUU   1933 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:864   GGUUCUACCCCAAUCCAUAUGGAUU   888 Target Full Sequence	3.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UUAGGAGGAG-UUAGGUAUACCUAA   1   ||||-|||||-|||||||||||||| targets:1010   AAUC-UCCUCCAAUCCAUAUGGAUU   1033 Target Full Sequence	2.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:792   GGUUCUACCCCAAUCCAUAUGGAUU   816 Target Full Sequence	3.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:791   GGUUCUACCCCAAUCCAUAUGGAUU   815 Target Full Sequence	3.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=*|-||*||||||||||||||| targets:793   GGUUYUACCCCAAUCCAUAUGGAUU   817 Target Full Sequence	3.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:845   GGUUCUACCCCAAUCCAUAUGGAUU   869 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:364   GGUUCUACCCCAAUCCAUAUGGAUU   388 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU975791.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=|*|||||||=|||||||||| targets:1213   GGUUCCCCUCAAUUCAUAUGGAUU   1236 Target Full Sequence	2.5	Zea mays clone 500984 partner of Nob1 mRNA, complete cds	NA	coding protein	psRNATarget
EU959771.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =*|=*|==|=|||||||||||||| targets:1235   GCUUAUUUUUAAUCCAUAUGGAUU   1258 Target Full Sequence	3.0	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =*|=*|==|=|||||||||||||| targets:1156   GCUUAUUUUUAAUCCAUAUGGAUU   1179 Target Full Sequence	3.0	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
BT085188.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =*|=*|==|=|||||||||||||| targets:1280   GCUUAUUUUUAAUCCAUAUGGAUU   1303 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =*|=*|==|=|||||||||||||| targets:1124   GCUUAUUUUUAAUCCAUAUGGAUU   1147 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT041645.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   =*|=*|==|=|||||||||||||| targets:1239   GCUUAUUUUUAAUCCAUAUGGAUU   1262 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=*|==|||||||||||||||| targets:385   GGUUAUUUUCAAUCCAUAUGGAUU   408 Target Full Sequence	2.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
EU965673.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ==|=|*|||||||=|||||||||| targets:917   GGUUCCCCUCAAUUCAUAUGGAUU   940 Target Full Sequence	2.5	Zea mays clone 287893 partner of Nob1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   =||=||-||*||||||||||||||| targets:858   GAUUCUACCCCAAUCCAUAUGGAUU   882 Target Full Sequence	3.0	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   UUAGGAGGAG-UUAGGUAUACCUAA   1   ||||-|||||-|||||||||||||* targets:337   AAUC-UCCUCCAAUCCAUAUGGAUG   360 Target Full Sequence	3.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU967408.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||=|*=*||||||||||||||| targets:878   AAUCUUGUCCAAUCCAUAUGGAUU   901 Target Full Sequence	3.0	Zea mays clone 302604 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150851.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||=|*=*||||||||||||||| targets:878   AAUCUUGUCCAAUCCAUAUGGAUU   901 Target Full Sequence	3.0	Zea mays uncharacterized LOC100277218 (cl4730_1), mRNA	NA	coding protein	psRNATarget
AY110728.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   ||||=|*=*||||||||||||||| targets:414   AAUCUUGUCCAAUCCAUAUGGAUU   437 Target Full Sequence	3.0	Zea mays CL4730_1 mRNA sequence	NA	coding protein	psRNATarget
EZ075586.1	ncRNA:24   UUAGGAGGAGUUAGGUAUACCUAA   1   |||=||*=*||||||||||||||| targets:36   AAUUCUAUACAAUCCAUAUGGAUU   59 Target Full Sequence	3.0	TSA: Zea mays contig11223, mRNA sequence	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:1682   GGUUCUACCCCAAUCCAUAUGGAUU   1706 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:890   GGUUCUACCCCAAUCCAUAUGGAUU   914 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   UUAG-GAGGAGUUAGGUAUACCUAA   1   ==|=-=||=|||||||||=|||||| targets:817   GGUUGUUCUUCAAUCCAUGUGGAUU   841 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   UUAG-GAGGAGUUAGGUAUACCUAA   1   ==|=-=||=|||||||||=|||||| targets:788   GGUUGUUCUUCAAUCCAUGUGGAUU   812 Target Full Sequence	2.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   UUAG-GAGGAGUUAGGUAUACCUAA   1   ==|=-=||=|||||||||=|||||| targets:736   GGUUGUUCUUCAAUCCAUGUGGAUU   760 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   UUAG-GAGGAGUUAGGUAUACCUAA   1   ==|=-=||=|||||||||=|||||| targets:736   GGUUGUUCUUCAAUCCAUGUGGAUU   760 Target Full Sequence	2.5	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:1048   GGUUCUACCCCAAUCCAUAUGGAUU   1072 Target Full Sequence	3.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:703   GGUUCUACCCCAAUCCAUAUGGAUU   727 Target Full Sequence	3.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:24   UUAGGA-GGAGUUAGGUAUACCUAA   1   ==|=||-||*||||||||||||||| targets:117   GGUUCUACCCCAAUCCAUAUGGAUU   141 Target Full Sequence	3.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget