Search result

BaseInfo

ncRNA ID	novel_zma_miR4715
Species	Zea mays
Class	miRNA
Genome position	Chr2:42483810-42483881 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR3341905
Length	24
Mature sequence(if miRNA)	49 - AUUUUGAUCUGUUUUUGUGGGCCU - 72
Stem-loop(if miRNA)	--       U       AGA     AAAUU   AAA   GUCCAUA AAAUAGA   AAAAU     GCU   U   ||||||| |||||||   |||||     |||   A   CGGGUGU UUUGUCU   UUUUA     UGA   G UC       U       -AG     AAAGU   AUU
Stem-loop sequence	GUCCAUAUAAAUAGAAGAAAAAUAAAUUGCUAAAUAGUUAAGUUGAAAAUUUUGAUCUGUUUUUGUGGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672804.2	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   ||*||||||||=|||||||||||| targets:1830   AGACCCACAAAGACAGAUCAAAAU   1853 Target Full Sequence	1.5	PREDICTED: Zea mays Formin-like protein 18 (LOC103648311), mRNA	NA	coding protein	psRNATarget
XM_020540684.1	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   ||*|||||=||||||||||=|||| targets:13   AGACCCACGAAAACAGAUCGAAAU   36 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-11-like (LOC103631866), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ051288.1	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   ||*|||||||||||||||||||*| targets:96   AGACCCACAAAAACAGAUCAAAUU   119 Target Full Sequence	1.5	TSA: Zea mays contig52408, mRNA sequence	NA	coding protein	psRNATarget
BT062864.1	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   |||=|||*|||||||*|||||||| targets:696   AGGUCCAAAAAAACAUAUCAAAAU   719 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002K01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174772.1	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   |||=|||*|||||||*|||||||| targets:696   AGGUCCAAAAAAACAUAUCAAAAU   719 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382006 (LOC100382006), mRNA	NA	coding protein	psRNATarget
XM_008666667.2	ncRNA:24   UCCGGGUGUUUUUGUCUAGUUUUA   1   |*****|||||||||||||||||| targets:3353   AUAAAAACAAAAACAGAUCAAAAU   3376 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643472 (LOC103643472), mRNA	NA	coding protein	psRNATarget