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BaseInfo

ncRNA ID	novel_zma_miR4714
Species	Zea mays
Class	miRNA
Genome position	Chr1:286168106-286168170 [+]
Reference genome	RefGen_v4
Source	SRR2287162;SRR5451003;SRR5451004;SRR2089706
Length	24
Mature sequence(if miRNA)	42 - GCCAGAUUGGUGGGUCGGAACGAU - 65
Stem-loop(if miRNA)	--          G       C  - A     CU   CGUUCCGACC ACCAAUC GG G CAGGC  U   |||||||||| ||||||| || | |||||  G   GCAAGGCUGG UGGUUAG CC C GUUUG  U UA          G       A  G -     CU
Stem-loop sequence	CGUUCCGACCGACCAAUCCGGGACAGGCCUUGUUCGUUUGCGCCAGAUUGGUGGGUCGGAACGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941248.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||| targets:201   AUCGUUCCGACCCACCAAUCCGGC   224 Target Full Sequence	1.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
AY111211.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||| targets:5   AUCGUUCCGACCCACCAAUCCGGC   28 Target Full Sequence	1.5	Zea mays CL41880_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||| targets:4499   AUCGUUCCGACCCACCAAUCCGGC   4522 Target Full Sequence	1.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||= targets:641   AUCGUUCCGACCCACCAAUCCGGU   664 Target Full Sequence	2.5	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||= targets:2669   AUCGUUCCGACCCACCAAUCCGGU   2692 Target Full Sequence	2.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||||||||||||||*||= targets:2672   AUCGUUCCGACCCACCAAUCCGGU   2695 Target Full Sequence	2.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||||||*||||||||||||*||| targets:89   AUCGUUCAGACCCACCAAUCCGGC   112 Target Full Sequence	2.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||||||*||||||||||||*||| targets:89   AUCGUUCAGACCCACCAAUCCGGC   112 Target Full Sequence	2.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||||||*||||||||||||*||| targets:89   AUCGUUCAGACCCACCAAUCCGGC   112 Target Full Sequence	2.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238001.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||*||||||||||||||||*||| targets:7   AUCAUUCCGACCCACCAAUCCGGC   30 Target Full Sequence	1.5	Sequence 3996 from Patent EP2985353	NA	coding protein	psRNATarget
JB166332.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||*||||||||||||||||*||| targets:7   AUCAUUCCGACCCACCAAUCCGGC   30 Target Full Sequence	1.5	Sequence 3996 from Patent EP2559767	NA	coding protein	psRNATarget
HI405871.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   |||*||||||||||||||||*||| targets:7   AUCAUUCCGACCCACCAAUCCGGC   30 Target Full Sequence	1.5	Sequence 3996 from Patent EP2074227	NA	coding protein	psRNATarget
EU975407.1	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||*|||||||||||*||| targets:556   AUCGUUCCUACCCACCAAUCCGGC   579 Target Full Sequence	2.5	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   UAGCAAGGCUGGGUGGUUAGACCG   1   ||||||||*|||||||||||*||| targets:2758   AUCGUUCCCACCCACCAAUCCGGC   2781 Target Full Sequence	2.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget