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BaseInfo

ncRNA ID	novel_zma_miR4701
Species	Zea mays
Class	miRNA
Genome position	Chr9:46984433-46984503 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AGGCACUCGGCAAAGGAUCUGUCA - 24
Stem-loop(if miRNA)	--A                UCU           UUG    GGCACUCGGCAAAGGA   GUCACCGUUAC   G    ||||||||||||||||   |||||||||||    CCGUGAGCCGUUUCUU   CAGUGGCAGUG   C UAA                -UU           CCG
Stem-loop sequence	AGGCACUCGGCAAAGGAUCUGUCACCGUUACUUGGCGCCGUGACGGUGACUUUUCUUUGCCGAGUGCCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ087925.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||*==|*|=||||||||||||||| targets:47   UGUUGGCUUCUUUGCCGAGUGCCU   70 Target Full Sequence	2.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   *||||||**||||||||||||||* targets:2   CGACAGAGACUUUGCCGAGUGCCG   25 Target Full Sequence	3.0	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   *||||||**||||||||||||||* targets:2   CGACAGAGACUUUGCCGAGUGCCG   25 Target Full Sequence	3.0	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   *||||||**||||||||||||||* targets:2   CGACAGAGACUUUGCCGAGUGCCG   25 Target Full Sequence	3.0	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||*==|*|=||||||||||||||| targets:1146   UGUUGGCUUCUUUGCCGAGUGCCU   1169 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||*==|*|=||||||||||||||| targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||*==|*|=||||||||||||||| targets:1283   UGUUGGCUUCUUUGCCGAGUGCCU   1306 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||*|=||**||||||||||||||| targets:839   UGCCGGACGCUUUGCCGAGUGCCU   862 Target Full Sequence	2.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676330.2	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ||-==*||=||||||||||||||| targets:1715   UG-UGUAUUCUUUGCCGAGUGCCU   1737 Target Full Sequence	2.0	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   ACU--GUCUAGGAAACGGCUCACGGA   1   *||--==|||*||*|||||||||||| targets:325   GGAAUUGGAUGCUGUGCCGAGUGCCU   350 Target Full Sequence	2.5	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658805.2	ncRNA:24   ACUGUCUAGGAAACGGCUCACGGA   1   ***|||||||*||||||||*|||| targets:1362   GCUCAGAUCCCUUGCCGAGCGCCU   1385 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636454 (LOC103636454), mRNA	NA	coding protein	psRNATarget