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BaseInfo

ncRNA ID	novel_zma_miR4700
Species	Zea mays
Class	miRNA
Genome position	Chr2:15526781-15526945 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	142 - AAGAAAAUACUCGGCGAAGAAGCU - 165
Stem-loop(if miRNA)	--A                   A                 U     U      C       G    UC             UU    AGAAAAUACUCGGCGAAGA GCUCUUUGUCGAGUGUU UAUUU UGACAC CGGCAAA AGUU  UUUGCCGAGUGUC  U    ||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||  |||||||||||||  U    UUUUUUGUGAGCCGUUUCU CGAGAAACGGCUCACAA AUAAA ACUGUG GCUGUUU UCGG  AAAUGGCUCACAG  U UUC                   -                 C     U      A       A    -U             UU
Stem-loop sequence	AAGAAAAUACUCGGCGAAGAAGCUCUUUGUCGAGUGUUUUAUUUUUGACACCCGGCAAAGAGUUUCUUUGCCGAGUGUCUUUUUUUGACACUCGGUAAAUGGCUAUUUGUCGAGUGUCAUAAAUACAACACUCGGCAAAGAGCUCUUUGCCGAGUGUUUUUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU958868.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:612   AGUUAUUCUACGCCGAGUAUUUUCUU   637 Target Full Sequence	1.0	Zea mays clone 208133 mRNA sequence	NA	coding protein	psRNATarget
NM_001146962.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:968   AGUUAUUCUACGCCGAGUAUUUUCUU   993 Target Full Sequence	1.0	Zea mays Small RNA degrading nuclease 3 (LOC100272493), mRNA	NA	coding protein	psRNATarget
BT038826.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:968   AGUUAUUCUACGCCGAGUAUUUUCUU   993 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0332H01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543534.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:1017   AGUUAUUCUACGCCGAGUAUUUUCUU   1042 Target Full Sequence	1.0	PREDICTED: Zea mays Small RNA degrading nuclease 3 (LOC100272493), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034581.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:1299   AGUUAUUCUACGCCGAGUAUUUUCUU   1324 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0001M07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137783.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:1299   AGUUAUUCUACGCCGAGUAUUUUCUU   1324 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192568 (LOC100192568), mRNA	NA	coding protein	psRNATarget
XM_008668872.2	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||||||||||||||| targets:1448   AGUUAUUCUACGCCGAGUAUUUUCUU   1473 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100192568 (LOC100192568), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550647.1	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||=|||||||||||| targets:686   AGUUAUUCUACGCUGAGUAUUUUCUU   711 Target Full Sequence	2.5	PREDICTED: Zea mays homogentisate geranylgeranyltransferase-like (LOC103651727), mRNA	NA	coding protein	psRNATarget
XM_008661550.2	ncRNA:24   UCGA--AGAAGCGGCUCAUAAAAGAA   1   ||=|--|||*|||=|||||||||||| targets:1484   AGUUAUUCUACGCUGAGUAUUUUCUU   1509 Target Full Sequence	2.5	PREDICTED: Zea mays homogentisate geranylgeranyltransferase, chloroplastic (LOC103638712), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060840.1	ncRNA:24   UCGAAGAAGC-GGCUCAUAAAAGAA   1   |||**|||*|-|||||||||||||| targets:115   AGCACCUUAGGCCGAGUAUUUUCUU   139 Target Full Sequence	3.0	TSA: Zea mays contig61962, mRNA sequence	NA	coding protein	psRNATarget