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BaseInfo

ncRNA ID novel_zma_miR4698
Species Zea mays
Class miRNA
Genome position Chr9:49658945-49659057 [-]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 1 - UGAAAUGGAAUAAAGUGGAGGGAC - 24
Stem-loop(if miRNA) --                        CCC      AC      UA          C
  CUCUCCAUUUUAUUCCAUUUUAGU   UAAAUU  UAAAUA  GAAACUAAAA U
  ||||||||||||||||||||||||   ||||||  ||||||  |||||||||| C
  GGGAGGUGAAAUAAGGUAAAGUCA   AUUUAA  AUUUAU  CUUUGAUUUU U
CA                        AAU      CA      UC          A
Stem-loop sequence CUCUCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCUUAUUUAACAAUUUAUAAACUGAAAUGGAAUAAAGUGGAGGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT019141.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:295   GUCCCUCCAUUUUAUUCCAUUUUA   318

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EU967664.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||=||||||||||||||||||=|
targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150

1.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||=||||||||||||||||||=|
targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150

1.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
HI406713.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||=||||||||||||=|
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||=|||||=||||||||||||=|
targets:2152   GUCUCUCCAUUUUAUUCCAUUUUA   2175

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EU945607.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  |||||||||*||||||||||||=|
targets:144   GUCCCUCCAAUUUAUUCCAUUUUA   167

2.5 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
HI402994.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  ||||||*|||||||||||||||=|
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

2.5 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  ||||||*|||||||||||||||=|
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

2.5 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  ||||||*|||||||||||||||=|
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

2.5 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   CAGGGAGGUGAAAUAAGGUAAAGU   1
  *||==||||=||||||||||||=|
targets:2085   AUCUUUCCAUUUUAUUCCAUUUUA   2108

2.5 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
HI403336.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1461 from Patent EP2074227 NA coding protein psRNATarget
LQ235448.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1443 from Patent EP2985353 NA coding protein psRNATarget
LQ235398.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1393 from Patent EP2985353 NA coding protein psRNATarget
LQ235579.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1574 from Patent EP2985353 NA coding protein psRNATarget
HI403449.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1574 from Patent EP2074227 NA coding protein psRNATarget
HI403268.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1393 from Patent EP2074227 NA coding protein psRNATarget
JB163729.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1393 from Patent EP2559767 NA coding protein psRNATarget
JB163797.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1461 from Patent EP2559767 NA coding protein psRNATarget
JB163779.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1443 from Patent EP2559767 NA coding protein psRNATarget
LQ235466.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1461 from Patent EP2985353 NA coding protein psRNATarget
JB163910.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1574 from Patent EP2559767 NA coding protein psRNATarget
HI403318.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  |||||||||||||||||=|
targets:1   UCCACUUUAUUCCAUUUUA   19

1.5 Sequence 1443 from Patent EP2074227 NA coding protein psRNATarget
LQ235528.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  ||=||||||||||||||=|
targets:1   UCUACUUUAUUCCAUUUUA   19

2.5 Sequence 1523 from Patent EP2985353 NA coding protein psRNATarget
JB163821.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  ||||=||||||||||||=|
targets:1   UCCAUUUUAUUCCAUUUUA   19

2.5 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
HI403419.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  ||||=||||||||||||=|
targets:1   UCCAUUUUAUUCCAUUUUA   19

2.5 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
JB163859.1
ncRNA:19   AGGUGAAAUAAGGUAAAGU   1
  ||=||||||||||||||=|
targets:1   UCUACUUUAUUCCAUUUUA   19

2.5 Sequence 1523 from Patent EP2559767 NA coding protein psRNATarget
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